Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001307.1 Hibiscus syriacus cultivar Beakdansim tig00002548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59716

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2755--2855
51
2.0
51
98
0
193
37
10
6
44
1.67
7660--7719
23
2.7
21
85
14
84
26
6
28
38
1.81
12853--12891
20
2.0
20
84
0
51
33
12
23
30
1.92
15605--15674
20
3.5
20
80
1
70
34
8
20
37
1.83
15835--15883
20
2.5
20
86
0
62
36
38
8
16
1.78
16855--16900
15
3.1
15
90
6
67
28
6
26
39
1.81
17134--17177
23
1.9
23
85
0
61
27
15
25
31
1.96
18588--18855
69
3.9
69
78
1
250
23
36
3
36
1.73
20340--20517
65
2.8
63
77
10
184
27
17
21
32
1.96
21007--21043
2
18.5
2
100
0
74
51
0
0
48
1.00
21625--21668
21
2.1
21
82
0
52
36
13
38
11
1.81
29559--29612
22
2.4
23
81
3
65
25
9
16
48
1.76
29709--29763
19
2.7
21
86
13
87
7
16
5
70
1.28
30352--30385
16
2.1
16
88
0
50
17
17
0
64
1.29
34996--35020
13
1.9
13
100
0
50
56
0
4
40
1.18
34926--35312
183
2.1
184
91
3
631
43
3
8
45
1.49
35318--35351
9
3.7
9
96
4
59
23
8
17
50
1.74
36110--36137
2
14.0
2
100
0
56
50
0
0
50
1.00
36473--36559
42
2.1
42
84
0
111
20
8
14
56
1.64
38257--38303
14
3.3
14
82
5
58
34
10
4
51
1.56
38256--38298
14
2.9
15
82
6
61
30
11
4
53
1.57
38262--38311
15
3.4
15
76
15
50
32
8
4
56
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41483--41519
2
18.5
2
100
0
74
48
0
0
51
1.00
48906--48930
6
4.2
6
100
0
50
16
32
36
16
1.90
55116--55147
15
2.1
15
94
0
55
37
40
9
12
1.75
55951--56387
217
2.0
218
86
2
619
27
16
19
37
1.93

Tables:   1

The End!