genome.fa.s1324.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001324.1 Hibiscus syriacus cultivar Beakdansim tig00002580_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131359

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1984--2023	21	1.9	21	94	0	71	30	15	7	47	1.72
2018--2115	32	3.0	33	92	2	155	32	7	15	44	1.73
2101--2155	13	4.2	13	75	13	58	36	3	10	49	1.56
2546--2579	18	1.9	18	88	5	52	41	11	8	38	1.73
2527--2582	15	3.6	15	74	9	58	33	12	10	42	1.77
2672--2703	16	2.0	17	88	11	50	43	21	21	12	1.86
4996--5231	27	8.7	27	88	0	310	13	37	22	26	1.92
10233--10419	43	4.4	43	80	1	178	23	20	26	29	1.99
10211--10408	43	4.6	42	77	7	130	24	20	24	30	1.99
10428--10518	42	2.1	43	82	6	105	29	10	27	31	1.91
18447--18475	13	2.2	13	100	0	58	6	62	31	0	1.22
19242--19371	3	43.7	3	92	1	217	64	0	0	34	0.99
19665--20790	113	9.9	113	94	0	1901	28	19	15	36	1.92
21193--21269	22	3.5	22	90	0	127	37	14	14	33	1.86
23870--24078	83	2.5	83	99	0	409	36	22	14	26	1.92
26217--26263	6	7.5	6	83	9	58	0	21	0	78	0.75
26217--26263	13	3.7	13	85	2	60	0	21	0	78	0.75
26217--26263	19	2.4	19	89	3	67	0	21	0	78	0.75
26851--26879	1	29.0	1	100	0	58	0	0	0	100	0.00
28223--28278	27	2.1	27	86	0	76	60	8	10	19	1.55
28317--28369	14	3.7	14	87	2	70	54	9	13	22	1.67
31335--31363	13	2.2	13	100	0	58	6	62	31	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32127--32245	3	39.7	3	91	3	195	65	0	0	33	0.99
34297--34488	82	2.4	82	86	6	257	31	17	18	32	1.94
34297--34436	41	3.4	40	79	9	158	30	16	17	35	1.92
34336--34482	41	3.6	41	74	9	131	31	17	19	30	1.95
35540--35588	22	2.2	22	85	0	71	26	16	14	42	1.86
36076--36128	26	2.1	26	85	3	72	30	26	15	28	1.96
37635--37703	3	23.3	3	79	5	70	30	2	1	65	1.16
45020--45159	75	1.9	75	95	0	253	40	22	10	27	1.86
53128--53218	47	1.9	48	84	2	121	25	15	19	39	1.91
53128--53221	24	4.0	24	83	2	109	24	14	20	40	1.90
54312--54348	20	1.9	19	89	10	58	48	10	21	18	1.78
59107--59171	32	2.0	32	87	0	94	52	13	6	27	1.64
64691--64740	24	2.1	24	84	0	64	46	20	18	16	1.85
67532--67597	33	1.9	34	87	6	98	43	6	10	39	1.64
67595--67652	21	2.8	20	84	7	64	53	1	3	41	1.28
67615--67710	35	2.9	32	83	8	120	44	3	10	41	1.54
67615--67739	32	3.6	34	81	11	128	43	4	12	40	1.60
67635--67738	35	2.9	35	84	5	127	42	4	11	41	1.62
67785--67828	4	10.5	4	80	9	52	29	0	2	68	1.02
67790--67833	22	2.2	21	84	15	58	27	0	2	70	0.99
69757--69804	2	24.0	2	100	0	96	50	0	0	50	1.00
70777--71069	30	8.5	34	77	15	191	43	3	10	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71115--71148	18	1.9	17	94	5	59	29	0	8	61	1.26
72677--72707	15	2.1	15	100	0	62	38	0	0	61	0.96
75704--75808	31	3.5	31	78	8	92	44	3	10	40	1.57
77613--77665	27	2.0	27	88	0	79	56	11	11	20	1.65
77664--77741	30	2.6	30	93	2	129	65	7	12	14	1.46
88775--88897	53	2.3	54	90	2	185	41	24	6	27	1.79
91977--92008	16	2.0	16	93	0	55	34	6	25	34	1.81
97335--97372	11	3.7	10	86	13	51	18	7	0	73	1.06
97333--97372	22	1.9	20	90	10	62	20	7	0	72	1.08
99397--99558	55	2.9	55	96	0	288	36	16	10	36	1.83
99883--99954	20	3.5	20	79	7	90	27	23	15	33	1.95
99883--99981	22	4.7	21	79	8	103	28	23	13	35	1.92
99883--99976	42	2.2	42	90	0	143	28	23	13	34	1.93
100059--100112	21	2.6	21	100	0	108	29	22	14	33	1.94
101703--101832	49	2.7	49	93	2	217	25	6	15	53	1.65
104859--104888	2	15.0	2	100	0	60	50	0	0	50	1.00
106067--106142	38	2.0	38	97	2	145	22	40	7	28	1.82
109250--109292	20	2.2	20	100	0	86	30	23	18	27	1.98
111916--111982	3	21.7	3	77	11	64	59	0	5	34	1.22
111911--111986	12	6.5	11	79	5	53	60	0	5	34	1.19
112228--112647	139	3.0	138	81	3	468	25	14	28	32	1.95
112642--112683	21	2.0	21	95	0	75	45	9	16	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112697--113165	37	13.4	37	72	12	323	37	14	19	29	1.90
112735--112987	66	3.8	66	74	11	251	37	13	18	29	1.90
112650--112872	103	2.2	103	92	0	367	39	14	18	28	1.90
112956--113021	22	3.4	21	66	25	63	37	15	21	25	1.92
112697--113023	137	2.4	138	88	1	512	37	14	19	29	1.90
112838--113128	103	2.8	103	87	3	392	37	13	18	30	1.89
112838--113136	104	2.9	104	84	5	376	37	13	18	30	1.90
112801--113310	278	1.8	274	80	7	600	37	12	18	31	1.88
113396--113531	37	3.7	36	73	8	123	35	11	17	35	1.87
113398--113549	73	2.1	73	82	7	184	37	13	17	32	1.88
119317--119354	2	19.0	2	100	0	76	50	0	0	50	1.00
123583--123618	18	2.0	18	100	0	72	33	11	11	44	1.75
126001--126073	18	3.9	18	84	7	101	20	21	30	27	1.98
125998--126074	38	2.0	38	92	0	127	22	22	28	27	1.99
130755--130789	15	2.3	15	100	0	70	28	34	22	14	1.93

Tables:   1

The End!