genome.fa.s1330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001330.1 Hibiscus syriacus cultivar Beakdansim tig00002596_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140566

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3028--3118	27	3.4	27	96	3	168	68	0	10	20	1.20
3350--3416	31	2.2	31	88	0	98	32	8	20	37	1.84
4731--4778	24	2.0	24	95	0	87	31	29	6	33	1.82
5246--5298	28	1.9	28	88	3	81	20	7	20	50	1.72
5274--5335	20	3.0	20	69	17	54	27	4	16	51	1.64
9098--9348	50	5.0	50	93	0	367	29	27	7	36	1.83
19584--19690	17	5.8	18	70	22	62	39	0	1	58	1.09
19614--19686	26	2.9	27	82	13	93	45	0	1	53	1.09
19639--19723	38	2.2	37	85	12	109	43	0	1	55	1.07
19589--19744	64	2.5	64	93	4	264	41	0	1	57	1.10
19739--19800	19	3.3	19	78	15	58	37	1	0	61	1.06
20263--20322	31	1.9	31	90	6	95	43	8	6	41	1.61
24594--24637	12	3.8	12	78	6	54	29	4	2	63	1.26
24639--24668	2	15.0	2	92	0	51	53	0	0	46	1.00
25475--25518	17	2.6	16	86	10	61	27	2	0	70	0.99
29655--29789	72	1.9	72	90	3	218	25	20	20	34	1.97
31771--31996	114	2.0	114	91	0	371	32	15	21	30	1.95
34033--34162	50	2.6	50	88	2	199	36	15	19	28	1.92
34534--34586	22	2.4	22	87	0	79	33	15	13	37	1.86
34996--36569	113	13.9	112	90	2	2282	38	14	18	28	1.91
34996--36565	340	4.6	337	90	2	2303	38	14	18	27	1.91
35008--36569	453	3.5	453	95	1	2751	38	14	19	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38188--38231	12	3.8	12	78	6	54	29	4	2	63	1.26
39476--39680	5	40.6	5	75	20	180	39	0	2	57	1.21
39477--39684	8	23.3	9	72	25	135	39	0	2	56	1.21
39497--39684	36	5.6	34	75	19	155	39	1	2	56	1.20
42351--42385	18	1.9	18	88	0	52	74	2	2	20	1.08
42638--42679	14	3.0	14	86	13	59	14	14	19	52	1.75
43663--43720	23	2.5	23	88	0	89	34	6	27	31	1.83
43803--43862	29	2.1	29	87	0	84	55	1	15	28	1.50
45270--45682	139	3.0	139	84	0	531	24	16	25	32	1.96
46068--46263	102	1.9	104	86	4	281	35	10	20	33	1.86
48688--48727	17	2.4	16	88	8	62	70	2	2	25	1.13
48866--48918	16	3.3	16	86	0	70	35	3	28	32	1.75
49795--49852	14	4.4	13	77	12	57	74	5	15	5	1.18
50334--50474	76	1.9	76	93	3	248	27	1	12	58	1.42
54006--54035	5	5.8	5	92	7	51	16	3	0	80	0.85
53993--54035	16	2.7	16	85	0	59	18	9	0	72	1.11
55982--56108	44	3.2	44	65	28	127	24	1	13	60	1.42
55979--56188	76	2.8	76	94	1	359	27	1	11	59	1.41
56788--56830	18	2.3	19	88	4	61	20	6	0	72	1.08
56860--56926	17	3.9	18	70	22	54	29	2	0	67	1.06
58686--58713	14	2.0	14	100	0	56	28	21	7	42	1.79
59603--59627	13	1.9	13	100	0	50	64	24	0	12	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59712--59750	20	2.0	20	89	0	60	33	0	7	58	1.26
63134--64129	492	2.0	493	95	0	1778	34	10	14	40	1.81
66649--66707	29	2.0	29	100	0	118	49	10	6	33	1.63
70433--70462	14	2.2	14	94	5	53	73	0	6	20	1.05
71276--71309	17	1.9	18	88	5	52	52	26	2	17	1.58
78648--78681	17	1.9	18	88	5	52	52	26	2	17	1.58
82920--82966	6	7.3	6	86	13	67	19	0	0	80	0.70
82923--82980	14	4.1	14	82	8	73	20	1	1	75	0.97
83612--83759	44	3.4	43	87	4	206	36	8	25	29	1.86
90515--90555	3	13.7	3	89	0	55	58	0	0	41	0.98
90507--90562	9	6.1	9	87	2	67	55	0	0	44	0.99
90705--93358	55	48.8	55	80	5	2331	23	24	19	31	1.98
90705--93358	110	24.4	110	82	4	2618	23	24	19	31	1.98
90705--93358	165	16.3	164	80	5	2590	23	24	19	31	1.98
101680--101713	3	11.0	3	93	6	59	64	0	0	35	0.94
101885--103066	55	21.9	55	81	5	1177	22	25	19	32	1.97
101885--103066	110	10.9	110	85	3	1300	22	25	19	32	1.97
104355--104401	19	2.6	18	80	12	51	12	14	0	72	1.13
104378--104415	17	2.2	18	85	4	51	5	13	2	78	1.02
123098--123136	18	2.2	18	100	0	78	20	10	38	30	1.86
125911--125950	14	2.8	15	88	7	57	25	7	27	40	1.82
126514--126579	19	3.3	20	79	8	64	46	3	4	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127022--127110	29	2.9	32	78	10	121	40	16	20	22	1.91
127251--127332	32	2.6	32	82	7	96	30	18	14	36	1.91
127654--127735	32	2.6	32	82	7	96	30	18	14	36	1.91
127232--128039	403	2.0	403	97	0	1535	31	25	16	26	1.96
131260--131306	18	2.6	19	86	10	71	65	4	6	23	1.33
132946--132993	21	2.3	21	78	7	53	8	12	6	72	1.26
135795--135842	6	7.5	6	82	13	60	77	0	6	16	0.97
135795--135842	19	2.5	20	89	3	80	77	0	6	16	0.97

Tables:   1

The End!