genome.fa.s1359.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001359.1 Hibiscus syriacus cultivar Beakdansim tig00002649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183523

Tables:   1   2   

This is table  1  of  2  ( 134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8839--8878	2	20.0	2	100	0	80	50	0	0	50	1.00
15493--15559	30	2.2	31	78	2	73	32	10	4	52	1.56
15637--15706	31	2.3	31	85	4	90	44	5	4	45	1.47
15639--15716	31	2.6	31	83	4	88	42	6	3	47	1.47
16395--16454	31	1.9	31	86	6	86	33	10	5	51	1.57
19431--19470	3	13.3	3	100	0	80	32	0	0	67	0.91
27085--27123	20	2.0	20	89	0	60	33	23	10	33	1.88
44127--44155	13	2.2	13	100	0	58	31	13	0	55	1.39
51522--51571	17	3.4	17	65	35	51	18	24	10	48	1.78
51521--51586	27	2.4	28	97	2	125	16	24	9	50	1.74
52870--52944	34	2.2	34	100	0	150	29	22	8	40	1.82
52870--52958	34	2.8	32	88	9	96	29	23	11	35	1.90
53860--53891	13	2.5	13	94	0	55	18	46	21	12	1.82
56381--56499	24	5.0	24	82	9	145	23	17	18	40	1.91
58585--58618	8	4.4	8	85	7	52	14	35	23	26	1.94
58588--58617	15	1.9	16	93	6	53	13	30	26	30	1.94
61078--61169	24	3.8	24	85	8	125	23	17	18	40	1.91
61079--61200	24	5.1	24	82	7	101	22	16	18	42	1.89
63281--63314	8	4.4	8	85	7	52	14	35	23	26	1.94
63284--63313	15	1.9	16	93	6	53	13	30	26	30	1.94
65774--65892	24	5.0	24	84	9	145	23	17	18	40	1.91
65851--65899	24	2.0	24	88	0	71	26	14	18	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67977--68010	8	4.4	8	85	7	52	14	35	23	26	1.94
67980--68009	15	1.9	16	93	6	53	13	30	26	30	1.94
70469--70587	24	5.0	24	84	9	154	22	18	18	40	1.91
72673--72706	8	4.4	8	85	7	52	14	35	23	26	1.94
72676--72705	15	1.9	16	93	6	53	13	30	26	30	1.94
75166--75284	24	5.0	24	84	9	154	22	18	18	40	1.91
77367--77400	8	4.4	8	85	7	52	14	35	23	26	1.94
77370--77399	15	1.9	16	93	6	53	13	30	26	30	1.94
79860--79978	24	5.0	24	80	9	136	23	16	18	41	1.90
82065--82098	8	4.4	8	85	7	52	14	35	23	26	1.94
82068--82097	15	1.9	16	93	6	53	13	30	26	30	1.94
84564--84675	24	4.7	24	83	6	138	24	15	19	41	1.90
84612--84685	24	3.1	24	84	3	87	22	14	18	43	1.87
87064--87103	21	1.9	21	94	0	71	57	0	0	42	0.98
87072--87107	19	1.9	18	88	5	54	55	0	0	44	0.99
87473--87505	17	1.9	18	88	11	52	27	3	12	57	1.49
88221--88647	37	11.6	36	87	8	530	45	3	7	43	1.49
88514--88561	25	2.0	25	91	4	80	45	4	6	43	1.48
88653--88706	23	2.3	23	84	12	67	24	0	3	72	1.01
88669--88724	12	5.0	11	76	18	53	17	0	1	80	0.80
88693--88722	15	2.1	14	93	6	51	10	0	0	90	0.47
88667--88724	23	2.5	24	83	10	77	17	0	3	79	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89937--90004	16	3.9	17	73	19	52	14	5	1	77	1.02
97546--97570	13	1.9	13	100	0	50	32	28	24	16	1.96
102430--102496	18	3.8	18	98	2	127	28	17	23	29	1.97
102433--102510	36	2.2	35	88	2	111	29	21	23	25	1.99
102694--102756	29	2.2	29	85	5	83	25	9	9	55	1.62
102722--102962	116	2.1	117	87	6	346	29	13	3	53	1.57
105706--105753	19	2.5	19	83	6	53	41	2	2	54	1.24
106006--106054	14	3.4	14	75	5	53	34	14	8	42	1.75
105998--106107	30	3.7	30	85	1	132	39	10	5	44	1.63
107115--107184	30	2.3	30	82	7	88	52	8	15	22	1.70
108958--109039	44	1.9	42	87	5	119	28	14	23	34	1.94
108879--109227	165	2.1	166	81	6	408	28	18	18	34	1.95
109036--109962	283	3.3	283	89	1	1378	27	18	18	35	1.94
110537--110610	37	2.0	37	89	0	112	51	21	6	20	1.70
111496--111935	54	8.1	55	78	7	350	42	17	9	30	1.80
111496--111852	108	3.3	108	81	6	395	41	17	9	31	1.82
111500--111935	163	2.7	159	82	8	461	42	16	9	30	1.80
114016--114070	20	2.6	21	78	18	69	3	18	1	76	1.02
114284--114337	2	27.0	2	100	0	108	50	0	0	50	1.00
117567--117662	29	3.3	28	77	13	104	47	10	15	26	1.77
117566--117670	30	3.6	30	80	3	124	48	10	15	25	1.76
118145--118174	15	2.1	14	93	6	51	6	16	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119357--119398	3	14.0	3	90	9	68	30	2	0	66	1.04
120345--120524	43	4.2	43	86	0	234	21	30	20	28	1.98
123533--123591	24	2.5	23	83	2	82	32	23	25	18	1.97
123574--123671	23	4.2	23	81	3	117	32	25	24	17	1.97
123574--123684	23	4.8	23	77	9	93	34	24	24	17	1.96
129077--129286	60	3.5	60	85	3	255	60	6	12	20	1.54
129125--129288	30	5.5	30	90	2	258	62	4	12	20	1.48
129075--129300	90	2.5	90	82	9	282	59	6	13	20	1.55
131373--131457	36	2.3	37	86	6	111	37	10	17	34	1.84
131406--131475	36	1.9	36	85	5	97	41	10	17	31	1.82
137329--137476	56	2.6	56	86	2	197	61	7	11	19	1.53
137347--137476	29	4.6	28	82	10	140	59	6	13	20	1.57
137348--137456	27	3.9	27	85	13	150	59	7	11	21	1.56
139787--139824	18	2.1	19	85	5	51	65	7	5	21	1.38
144238--144395	21	7.8	20	70	7	77	37	24	17	19	1.93
144363--144671	101	3.1	98	83	5	343	35	25	18	20	1.95
144363--144671	20	15.4	20	83	5	365	35	25	18	20	1.95
145343--145389	24	2.0	24	87	8	69	25	14	21	38	1.92
147851--148104	19	14.4	19	80	17	307	46	18	21	13	1.83
147851--147940	34	2.7	33	88	6	128	46	20	20	13	1.83
147851--148052	33	5.8	33	84	11	157	46	18	21	13	1.84
147879--148104	52	4.2	52	92	7	373	46	16	22	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147937--148126	33	5.5	33	90	6	263	45	17	22	14	1.84
148133--148215	20	4.6	19	81	15	113	14	24	18	43	1.87
148321--148357	14	2.6	14	91	0	65	45	21	0	32	1.52
150280--150370	32	2.8	32	93	3	157	46	21	20	10	1.82
150243--150375	19	7.6	19	75	18	110	45	24	19	11	1.83
150371--150499	19	7.3	19	75	17	125	8	17	28	45	1.77
150371--150462	33	2.8	33	93	3	150	7	18	28	45	1.76
150542--150919	92	4.1	93	98	1	726	46	18	12	22	1.83
152613--152726	33	3.5	33	92	2	203	44	21	24	9	1.82
152620--152731	14	6.8	18	73	22	95	42	22	25	9	1.84
152743--152796	14	3.6	14	77	18	63	9	25	24	40	1.85
152739--152805	32	2.1	32	91	0	107	10	26	22	40	1.86
152917--152987	33	2.2	33	92	0	115	47	18	22	11	1.80
153166--153220	22	2.5	22	81	0	74	20	16	40	23	1.91
153366--153558	20	9.6	20	82	5	219	19	19	25	35	1.95
153366--153558	60	3.2	60	83	0	251	19	19	25	35	1.95
156053--156088	2	18.0	2	100	0	72	50	0	0	50	1.00
157135--157185	21	2.4	21	93	0	93	41	7	3	47	1.51
160685--160723	2	20.0	2	85	15	55	48	0	2	48	1.15
160704--160763	33	1.9	33	83	16	83	51	0	5	43	1.23
160733--161074	38	9.0	37	80	9	327	50	2	4	42	1.34
160734--161067	39	8.8	37	80	10	331	50	2	4	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160825--160884	28	2.1	28	81	6	68	53	1	3	41	1.27
161046--161088	21	2.0	21	90	0	68	46	0	6	46	1.30
161008--161121	59	2.0	54	88	8	165	50	0	5	42	1.30
161034--161090	23	2.4	23	77	16	64	49	0	5	45	1.24
161052--161095	21	2.1	21	86	0	61	47	0	6	45	1.29
161067--161159	37	2.6	36	83	8	111	48	3	6	41	1.45
161163--161216	15	3.8	14	75	20	58	20	0	1	77	0.86
161163--161222	18	3.2	18	77	15	59	20	0	1	78	0.84
161163--161221	28	2.1	27	90	3	91	20	0	1	77	0.85
161270--161385	52	2.2	52	87	3	162	33	32	20	12	1.91

Tables:   1   2