Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000136.1 Hibiscus syriacus cultivar Beakdansim tig00000249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61317

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34--95
32
1.9
32
87
6
90
45
19
17
17
1.86
3689--3900
54
4.0
53
78
10
200
37
16
21
24
1.93
3689--3832
52
2.7
52
82
10
184
38
15
20
25
1.92
4263--4322
22
2.7
22
84
7
86
35
16
15
33
1.90
4706--5147
123
3.7
123
83
7
476
39
14
18
27
1.90
4845--4908
20
3.2
20
63
20
53
43
7
23
25
1.80
4948--5148
109
1.8
111
88
4
309
39
14
16
29
1.89
5369--5452
3
28.0
3
83
9
109
33
1
0
65
1.00
5359--5452
19
4.7
19
78
8
82
30
1
1
67
1.05
5369--5451
25
3.4
25
77
14
93
32
1
0
66
1.00
5370--5452
22
3.6
24
81
12
102
33
1
0
65
1.01
7059--7495
140
3.3
139
83
11
474
38
7
6
47
1.58
7134--7468
140
2.5
129
89
9
482
37
7
8
47
1.62
9406--9440
18
1.9
18
88
0
52
0
25
0
74
0.82
16256--16433
90
2.0
90
94
0
311
38
10
5
45
1.63
19235--19320
44
2.0
44
85
0
118
25
17
23
33
1.96
20792--20872
32
2.5
34
78
13
82
49
16
0
34
1.46
20807--20870
33
2.0
31
82
11
76
48
17
0
34
1.47
21775--21850
20
3.6
20
87
7
98
28
22
17
31
1.96
21838--21998
64
2.5
63
83
5
198
24
24
18
33
1.97
29302--29352
20
2.5
20
84
6
68
23
21
17
37
1.94
34213--34249
19
1.9
19
94
0
65
32
29
16
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34346--34421
21
3.7
21
75
10
84
38
22
17
22
1.93
34347--34424
41
1.9
41
91
0
129
35
21
16
25
1.94
34566--34616
22
2.3
22
93
0
84
19
43
15
21
1.88
34694--34722
14
2.0
15
93
6
51
24
0
0
75
0.80
35003--35129
20
6.7
20
74
13
81
14
17
22
45
1.84
35007--35109
53
1.9
54
82
5
129
15
18
23
42
1.88
37250--37286
14
2.6
14
100
0
74
29
0
21
48
1.50
37283--37394
36
3.4
36
70
21
125
26
3
16
53
1.59
37264--37417
63
2.4
63
94
4
263
28
2
17
51
1.59
37469--37537
20
3.5
20
84
4
77
43
27
15
13
1.84
37560--37690
20
6.8
20
74
12
123
28
16
20
34
1.95
37661--37943
140
2.0
140
93
0
485
43
14
12
30
1.82
38001--38035
18
1.9
18
94
0
61
17
2
25
54
1.57
40233--40286
24
2.2
24
93
0
90
40
20
18
20
1.91
41104--41172
20
3.5
20
83
0
84
28
20
27
23
1.99
41717--41742
11
2.4
11
100
0
52
38
0
0
61
0.96
43116--43508
185
2.1
185
91
3
639
46
9
2
41
1.50
45885--46030
58
2.5
59
74
12
147
47
6
16
30
1.71

Tables:   1

The End!