genome.fa.s1396.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001396.1 Hibiscus syriacus cultivar Beakdansim tig00002726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227762

Tables:   1   2   

This is table  2  of  2  ( 221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91019--91088	36	1.9	36	82	5	88	70	0	4	25	1.06
92872--94239	106	12.9	106	94	0	2360	22	17	25	34	1.96
96318--96375	27	2.2	26	79	8	64	58	8	17	15	1.61
98121--98179	9	6.6	9	74	14	50	71	0	5	23	1.06
100076--100468	185	2.1	185	91	2	639	45	8	3	42	1.52
102038--102100	21	3.0	21	80	13	60	50	26	0	22	1.49
113032--113077	2	25.0	2	83	16	64	50	0	0	50	1.00
113434--113493	3	20.3	3	83	10	79	68	0	0	31	0.90
113434--113493	28	2.1	28	87	6	86	68	0	0	31	0.90
114977--115008	13	2.4	14	94	5	57	46	0	0	53	1.00
115001--115045	3	14.7	3	90	4	72	66	0	2	31	1.04
115719--116155	45	9.7	45	91	2	662	32	19	22	24	1.97
116803--116879	22	3.5	22	89	0	109	37	12	12	36	1.83
116820--116886	22	3.0	22	86	0	89	35	11	14	37	1.84
125563--125599	18	2.0	19	85	15	51	24	10	10	54	1.67
126911--127180	146	1.8	148	89	4	431	47	8	7	37	1.62
128743--128774	13	2.4	14	94	5	57	46	0	0	53	1.00
128767--128812	3	15.0	3	95	4	83	65	0	2	32	1.05
128767--128812	22	2.1	22	96	4	85	65	0	2	32	1.05
130065--130106	16	2.6	17	85	7	52	54	4	0	40	1.21
132189--132228	21	1.9	21	85	10	55	30	15	5	50	1.65
132458--132502	3	15.0	3	100	0	90	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133697--133868	20	8.6	20	75	10	102	33	27	13	25	1.94
137161--137201	18	2.3	18	91	0	64	53	24	2	19	1.57
137286--137343	30	1.9	30	100	0	116	31	6	15	46	1.72
137428--137485	29	2.0	29	86	0	80	34	18	15	31	1.93
137567--137616	25	2.0	25	92	0	82	26	6	22	46	1.74
139104--139161	29	2.0	29	93	0	98	25	12	25	36	1.91
139110--139169	29	2.1	29	83	0	75	31	15	25	28	1.95
139163--139197	14	2.6	13	82	8	52	42	25	22	8	1.82
139185--139229	20	2.2	20	92	0	72	28	26	17	26	1.98
139276--139426	64	2.4	64	89	1	223	52	15	2	29	1.56
139405--139430	13	2.0	13	100	0	52	46	23	0	30	1.53
140801--140880	21	3.8	21	84	0	115	25	18	35	21	1.96
141020--141061	12	3.5	12	83	6	50	69	7	0	23	1.13
141172--141230	21	2.8	21	97	0	109	37	28	13	20	1.91
141284--141330	21	2.2	21	84	0	58	29	34	10	25	1.90
143028--143069	20	2.1	20	86	0	57	14	14	21	50	1.78
143397--143476	22	3.6	22	91	0	133	20	18	42	18	1.89
143643--143712	20	3.5	20	96	0	122	21	18	25	34	1.96
143937--143975	20	2.0	20	90	10	62	61	0	2	35	1.10
145573--145641	16	4.4	16	87	3	97	55	23	11	10	1.66
146737--146789	14	4.1	14	81	18	78	50	26	15	7	1.70
146727--146788	24	2.6	24	94	0	106	53	24	12	9	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147195--147258	29	2.2	29	88	0	92	34	9	10	45	1.72
147185--147441	135	1.9	135	90	1	408	35	12	14	38	1.83
147332--147393	29	2.1	29	87	0	88	33	9	14	41	1.79
147442--147498	29	2.0	29	82	3	71	42	7	8	42	1.63
147580--147643	29	2.2	29	94	0	110	34	9	10	45	1.72
148091--148203	30	4.0	30	77	13	121	47	15	9	27	1.76
148132--148179	24	2.0	24	100	0	96	45	20	8	25	1.79
149074--149102	13	2.1	14	93	6	51	34	3	6	55	1.44
152961--152990	10	2.9	10	95	5	51	20	56	20	3	1.56
155558--155648	24	3.8	24	82	2	121	27	16	18	37	1.92
160206--160258	24	2.4	22	81	12	63	33	15	15	35	1.88
166551--166598	16	2.9	16	84	3	60	33	0	2	64	1.05
166527--166595	24	3.0	23	76	19	65	28	0	2	68	1.04
166549--166604	25	2.2	26	83	3	69	28	0	1	69	0.98
166676--166723	18	2.6	19	83	6	62	43	2	2	52	1.24
169793--169849	27	2.1	27	96	0	105	31	29	19	19	1.96
170981--171022	17	2.5	17	81	11	50	66	2	2	28	1.16
170974--171030	30	1.9	30	82	7	71	66	1	1	29	1.12
170986--171045	23	2.5	25	77	20	65	66	1	1	30	1.11
172323--172368	9	5.0	9	87	12	67	86	0	0	13	0.56
172323--172364	20	2.2	20	91	8	70	88	0	0	11	0.53
172295--172394	29	3.5	28	76	9	94	77	3	4	16	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173663--173720	5	12.6	5	79	17	56	77	0	0	22	0.77
173663--173729	4	16.2	4	82	13	66	77	1	0	20	0.85
173678--173708	7	4.3	7	95	4	53	74	0	0	25	0.82
173776--174110	40	8.9	39	77	15	291	45	4	3	45	1.40
173942--173990	2	24.5	2	100	0	98	48	0	0	51	1.00
173870--174098	35	6.4	34	76	13	160	44	3	3	47	1.40
175934--175959	2	13.0	2	100	0	52	50	0	0	50	1.00
188899--189000	39	2.6	40	95	3	188	43	13	14	28	1.84
188899--189014	39	2.9	39	88	6	119	38	14	17	29	1.89
189337--189437	10	9.1	10	73	19	67	10	11	15	61	1.57
189337--189428	23	4.0	23	80	8	105	10	11	16	60	1.58
195056--195273	36	6.2	36	77	10	236	28	20	13	37	1.91
195084--195441	102	3.5	102	92	1	574	27	20	13	39	1.89
195344--195570	65	3.5	65	81	5	278	29	20	11	38	1.88
197528--197552	13	1.9	13	100	0	50	36	0	0	64	0.94
197992--198046	28	1.9	29	88	3	85	43	3	0	52	1.18
218312--218350	2	19.5	2	83	0	51	46	2	5	46	1.38
219859--219910	11	4.6	11	84	11	70	73	1	0	25	0.94
220113--220171	12	5.2	12	72	15	54	72	8	5	13	1.24
220244--220317	17	4.2	16	74	17	58	79	5	0	14	0.90
220236--220311	9	9.5	8	75	13	59	80	6	0	13	0.90
220218--220306	40	2.3	37	83	9	106	79	6	1	12	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220207--220316	5	21.6	5	71	15	57	78	7	0	13	1.01
220250--220315	23	3.0	23	74	12	66	78	4	0	16	0.90
220538--220617	21	3.8	21	76	0	70	41	8	28	21	1.83
220748--220818	26	2.8	26	95	2	126	53	7	12	26	1.64
220818--220987	93	1.8	94	82	8	222	45	4	20	29	1.71
221559--222252	2	346.0	2	65	21	208	42	5	5	46	1.48
221533--221598	31	2.2	30	88	2	96	36	6	1	56	1.34
221560--222246	35	19.4	35	68	18	202	42	5	5	46	1.48
221825--222009	75	2.4	75	81	12	191	44	4	5	45	1.46
221979--222024	11	3.9	12	86	11	51	36	6	8	47	1.60
222059--222252	21	9.9	19	70	21	111	46	3	3	46	1.37
222171--222328	13	12.3	13	67	19	57	42	5	5	47	1.47
222905--222945	16	2.6	16	92	0	64	31	21	21	24	1.98

Tables:   1   2

The End!