genome.fa.s1397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001397.1 Hibiscus syriacus cultivar Beakdansim tig00002727_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91661

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--146	37	3.9	36	86	8	180	24	18	22	34	1.96
5--146	72	1.9	75	84	8	193	24	18	22	34	1.96
1406--1667	125	2.1	125	87	2	366	24	25	17	32	1.97
5175--5266	21	4.4	21	90	2	123	11	21	19	46	1.82
9381--9571	54	3.5	54	91	0	301	21	25	17	35	1.95
9592--10114	55	9.6	55	91	0	818	29	25	14	30	1.94
10564--10706	37	3.8	37	92	0	223	23	18	22	35	1.95
10548--10706	74	2.1	74	88	4	232	23	18	22	35	1.96
14557--14587	6	5.2	6	100	0	62	32	19	32	16	1.94
14929--15007	15	5.4	15	68	6	54	48	0	1	50	1.08
14895--14992	43	2.3	43	87	3	137	51	1	1	46	1.14
17565--17597	16	2.0	17	88	5	50	51	0	0	48	1.00
19616--19698	42	2.0	42	92	2	141	40	7	2	49	1.43
20129--20427	164	1.8	164	89	0	472	47	12	12	27	1.78
20379--20677	151	2.0	151	91	1	483	44	13	14	28	1.82
20530--20914	183	2.1	180	91	4	632	42	13	15	28	1.85
21304--21349	19	2.4	19	88	0	65	43	0	17	39	1.49
22105--22173	23	3.0	23	86	0	102	26	26	26	21	2.00
22175--22399	101	2.2	102	90	3	355	36	22	13	27	1.91
23453--23497	21	2.1	21	87	0	63	15	24	28	31	1.96
25687--25729	9	4.8	9	85	0	59	32	11	53	2	1.50
26201--27016	200	4.1	200	92	0	1357	44	13	13	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26201--27016	401	2.0	398	93	1	1409	44	13	13	27	1.82
29977--30226	87	2.9	87	95	0	455	31	14	12	41	1.83
30061--30105	23	2.0	23	90	0	72	37	17	8	35	1.81
30148--30192	23	2.0	23	90	0	72	40	20	6	33	1.78
31177--31249	36	2.0	36	82	10	87	49	2	2	45	1.31
31754--31836	23	3.6	23	78	15	82	28	1	2	67	1.11
32071--32120	15	3.2	16	76	18	61	48	0	18	34	1.48
37586--37952	130	2.8	129	83	1	464	40	15	11	32	1.83
40590--40658	29	2.4	27	81	13	77	60	7	8	23	1.51
42017--42619	242	2.4	252	84	9	789	24	11	21	42	1.86
43204--43253	3	16.3	3	84	12	66	64	4	0	32	1.12
46616--46640	11	2.3	11	100	0	50	32	36	24	8	1.84
46827--47067	45	5.4	45	90	0	374	28	0	40	30	1.60
46826--47067	90	2.7	90	94	0	421	28	0	40	30	1.60
49435--49493	31	1.9	31	89	0	91	44	5	6	44	1.52
49517--49794	22	12.6	22	87	2	378	47	9	0	43	1.35
49517--49794	133	2.1	131	87	4	355	47	9	0	43	1.35
51853--52221	121	3.1	121	94	4	643	52	19	18	9	1.72
53925--53999	37	2.0	37	82	10	91	49	2	1	46	1.24
54963--55126	60	2.7	59	79	9	188	39	4	22	33	1.74
58961--59020	26	2.3	27	85	2	77	36	15	3	45	1.62
60107--60156	3	16.7	3	87	0	73	30	0	32	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60754--60806	21	2.5	21	93	0	88	30	32	20	16	1.95
60829--60893	23	2.8	23	95	0	112	20	23	18	38	1.93
61683--61714	6	5.3	6	100	0	64	0	18	46	34	1.49
63862--63914	21	2.5	21	81	0	70	20	22	18	37	1.94
63904--63969	20	3.3	20	86	0	105	40	18	18	22	1.91
63963--64029	20	3.3	20	87	0	98	32	28	16	22	1.95
64852--64905	24	2.2	24	93	0	90	20	18	20	40	1.91
67768--67845	21	3.6	22	71	10	63	20	20	35	23	1.96
67765--67872	42	2.6	41	75	7	110	23	19	36	21	1.95
68353--68441	20	4.4	20	88	0	124	38	22	19	20	1.94
68466--68576	40	2.9	35	78	18	107	18	20	21	39	1.92
68486--68614	20	6.5	20	89	1	179	18	18	22	40	1.92
68500--68611	59	1.9	59	92	0	188	16	19	22	41	1.89
69141--69190	18	2.8	18	93	0	91	18	12	42	28	1.85
69141--69206	18	3.7	18	86	11	75	18	12	40	28	1.86
70520--70682	20	8.6	19	78	9	138	46	22	19	12	1.83
70520--70633	58	1.9	59	92	1	194	48	21	18	11	1.79
70520--70618	19	5.1	20	87	2	139	50	21	18	10	1.75
70520--70681	78	2.2	73	85	5	207	46	22	18	12	1.83
71028--71084	22	2.6	22	91	0	87	28	12	36	22	1.90
72562--72604	16	2.7	15	82	13	50	39	2	0	58	1.11
72569--72633	23	2.9	21	74	19	60	41	3	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72575--72657	22	3.7	22	77	6	71	39	2	0	57	1.12
72621--72663	15	2.8	15	89	3	59	39	0	0	60	0.97
73448--73474	3	9.0	3	100	0	54	33	0	0	66	0.92
78308--78374	29	2.3	29	89	0	98	20	5	13	59	1.55
84055--84109	16	3.4	16	77	7	58	58	0	0	41	0.98
84041--84122	31	2.7	31	79	5	89	59	0	0	40	0.97
84848--85337	199	2.5	196	81	6	531	30	14	14	40	1.86
88049--88095	19	2.5	19	92	0	76	57	10	2	29	1.44

Tables:   1

The End!