genome.fa.s1398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001398.1 Hibiscus syriacus cultivar Beakdansim tig00002729_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84855

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3596--3671	39	1.9	39	94	0	134	46	14	9	30	1.76
9138--9186	19	2.6	19	93	0	80	20	8	28	42	1.80
9914--9961	23	2.1	23	84	0	60	39	8	16	35	1.79
9886--10134	85	2.9	85	87	1	363	42	10	14	32	1.80
10086--10199	22	5.2	22	89	8	171	40	8	20	30	1.83
10086--10199	45	2.6	43	93	4	192	40	8	20	30	1.83
10227--10286	23	2.6	23	83	0	75	41	8	15	35	1.77
10323--10381	23	2.7	21	80	10	73	37	10	20	32	1.86
10152--10371	87	2.6	87	89	3	333	42	10	15	32	1.80
9914--10388	237	2.0	239	92	2	796	42	10	14	32	1.80
10342--10388	23	2.0	23	95	0	85	46	8	14	29	1.74
10421--10470	23	2.2	23	85	0	64	44	12	10	34	1.75
10344--10543	86	2.3	86	88	0	310	44	11	12	32	1.77
10130--10543	194	2.1	192	89	3	643	43	10	14	31	1.79
11060--11115	24	2.4	23	83	16	80	57	3	0	39	1.16
11115--11553	199	2.2	196	87	4	616	30	14	13	40	1.85
11616--11698	36	2.2	40	83	12	104	49	1	1	48	1.16
11654--11722	30	2.3	31	82	7	79	49	1	0	49	1.09
11785--11838	24	2.3	23	82	17	67	40	0	3	55	1.17
16586--16657	20	3.6	20	86	0	99	9	23	45	20	1.81
20339--20371	9	3.7	9	84	15	50	45	0	3	51	1.16
20337--20371	18	1.9	18	100	0	70	45	0	2	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20471--20537	29	2.3	29	92	0	107	29	10	14	44	1.79
21035--21119	18	4.6	18	79	13	91	32	2	1	63	1.15
21712--21761	23	2.2	23	88	0	73	38	26	14	22	1.91
21776--22422	215	3.0	215	94	1	1115	29	12	8	49	1.70
24760--24786	2	13.5	2	100	0	54	48	0	0	51	1.00
25719--25765	12	3.8	12	75	13	51	74	2	6	17	1.12
26165--26217	26	1.9	26	85	11	70	43	0	0	56	0.99
27199--27308	42	3.0	34	72	20	105	51	16	4	27	1.63
27188--27280	42	2.2	42	94	0	159	52	16	3	27	1.59
27241--27322	34	2.4	34	85	6	103	53	17	3	25	1.60
27910--28038	11	12.5	11	73	18	116	27	25	20	27	1.99
27923--27994	28	2.6	27	72	14	83	27	29	18	25	1.98
27988--28029	12	3.6	12	77	6	50	26	21	23	28	1.99
27910--28074	17	8.4	20	82	13	120	29	26	18	26	1.98
27921--28075	80	1.9	79	90	1	247	30	26	17	25	1.97
27945--28078	17	7.2	17	83	11	124	29	27	16	26	1.97
28779--28803	12	2.1	12	100	0	50	60	24	0	16	1.36
30027--30155	35	3.7	33	81	6	141	23	0	25	51	1.49
30054--30277	14	16.3	14	64	15	67	21	2	27	48	1.63
30097--30134	13	2.8	14	96	4	69	21	0	26	52	1.47
30114--30176	21	3.0	21	75	13	58	22	0	25	52	1.47
30054--30141	7	12.7	7	71	7	63	21	0	30	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30180--30247	27	2.5	26	77	13	75	22	7	27	42	1.80
30239--30280	22	1.9	22	95	0	75	19	0	23	57	1.41
31475--31515	14	3.1	14	76	20	52	41	0	4	53	1.22
32141--32346	76	2.7	75	80	8	233	38	8	11	41	1.72
32318--32359	15	2.8	15	100	0	84	33	4	21	40	1.74
32318--32369	15	3.1	17	84	13	63	34	3	19	42	1.69
32362--32522	2	81.5	2	66	18	52	49	3	7	39	1.47
32357--32433	21	3.8	20	84	5	100	50	2	9	37	1.48
32362--32480	17	6.2	20	72	18	85	50	3	6	39	1.45
32439--32491	25	2.1	25	89	0	79	41	1	11	45	1.51
34976--35008	16	2.1	16	94	0	57	27	12	9	51	1.69
35273--35322	24	2.1	24	82	17	61	54	2	0	44	1.11
35368--35420	20	2.6	21	73	11	56	33	5	22	37	1.78
39719--39947	64	3.5	64	80	13	186	46	6	6	39	1.57
39791--39893	35	3.0	34	72	16	104	44	5	8	40	1.59
39789--39953	68	2.4	66	82	11	192	46	6	8	38	1.59
41505--41557	13	4.1	13	92	0	79	33	28	3	33	1.75
46412--46467	25	2.2	25	84	6	69	28	7	0	64	1.20
52172--52242	36	2.0	36	97	0	133	23	14	21	40	1.89
57097--57147	26	2.0	26	84	7	68	78	1	19	0	0.85
57097--57150	6	8.7	6	76	15	56	79	1	18	0	0.82
57096--57142	16	3.3	14	78	21	53	78	2	19	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57748--57774	14	1.9	14	100	0	54	40	22	14	22	1.90
58093--58635	106	5.3	104	83	5	667	34	25	19	21	1.96
58093--58637	205	2.6	205	91	2	842	33	25	19	21	1.97
60732--60800	28	2.6	27	78	14	65	27	5	1	65	1.24
66120--66164	15	2.9	15	87	6	63	33	15	17	33	1.92
67315--67348	2	17.0	2	100	0	68	50	0	0	50	1.00
67389--67451	24	2.7	24	82	2	74	42	19	11	26	1.84
67364--67457	47	2.0	46	83	2	116	44	15	13	25	1.84
68176--68275	30	3.4	30	88	2	141	43	24	4	29	1.72
74605--74674	24	2.9	24	80	0	86	45	17	10	27	1.80
75396--75460	29	2.2	30	91	5	107	40	26	6	27	1.80
76747--76776	11	2.8	11	95	5	53	6	16	0	76	0.99
77004--77030	12	2.2	12	100	0	54	37	0	0	62	0.95
78537--78568	16	2.0	16	93	0	55	34	15	6	43	1.72
79447--79471	13	1.9	13	100	0	50	32	20	8	40	1.81
80801--80834	18	1.9	18	88	5	52	44	2	0	52	1.16
84163--84350	44	4.3	44	85	2	245	30	17	17	34	1.93
84234--84306	20	3.5	20	67	10	65	30	19	15	35	1.92
84163--84350	87	2.1	88	83	2	245	30	17	17	34	1.93

Tables:   1

The End!