genome.fa.s1437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001437.1 Hibiscus syriacus cultivar Beakdansim tig00002786_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149801

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8102--8152	22	2.3	22	93	0	84	21	41	13	23	1.89
10140--10189	21	2.4	21	86	0	73	20	16	30	34	1.94
10588--10705	42	2.8	42	78	7	123	22	37	19	20	1.94
12105--12158	14	3.9	14	87	0	81	31	0	18	50	1.48
12055--12207	80	2.0	74	86	7	207	31	0	17	50	1.46
12489--12575	39	2.2	39	91	0	138	19	14	17	48	1.81
12885--12921	18	2.1	18	89	0	56	51	10	5	32	1.60
13296--13347	25	2.1	25	92	0	86	44	21	5	28	1.75
13413--13493	34	2.4	34	95	0	153	39	22	18	19	1.92
13481--13525	20	2.2	20	88	0	63	42	20	15	22	1.89
13538--13601	20	3.2	20	80	8	85	17	18	25	39	1.92
16191--16244	24	2.2	24	90	0	81	40	20	16	22	1.91
17160--17299	20	7.0	20	63	18	58	29	15	22	33	1.94
19152--19207	9	6.6	9	76	12	55	8	50	3	37	1.51
19158--19210	15	3.5	15	81	0	61	9	49	3	37	1.53
21721--21765	23	2.0	23	86	0	63	26	28	24	20	1.99
21746--22047	149	2.0	149	96	0	559	34	19	17	28	1.94
22870--22904	18	1.9	18	88	11	54	22	17	5	54	1.64
23484--23528	21	2.1	21	87	0	63	15	24	28	31	1.96
24288--24318	14	2.2	14	94	0	53	61	6	0	32	1.21
24528--24584	24	2.4	24	78	0	60	61	3	1	33	1.23
24772--24818	19	2.5	19	85	0	58	17	10	31	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28246--28416	60	2.8	59	73	10	157	35	21	4	38	1.75
34564--35313	187	4.0	187	98	0	1446	33	22	13	31	1.92
35558--35603	15	3.1	15	75	6	58	54	4	8	32	1.51
37035--37086	22	2.5	22	84	12	65	34	5	0	59	1.21
37047--37139	32	2.8	31	75	10	87	35	7	0	56	1.27
37207--37231	10	2.5	10	100	0	50	28	0	0	72	0.86
37242--37289	21	2.2	23	88	7	73	60	0	6	33	1.22
38042--38093	8	7.3	7	83	16	63	53	0	1	44	1.11
38053--38093	2	21.0	2	90	5	66	53	0	0	46	1.00
38535--38574	20	2.0	20	100	0	80	40	40	5	15	1.68
40666--40700	16	2.1	17	94	5	63	31	8	25	34	1.86
41450--41482	15	2.1	16	88	5	50	51	15	24	9	1.72
44740--44812	36	2.0	36	89	7	112	31	5	15	47	1.67
47678--47753	37	2.1	37	92	0	125	15	11	7	64	1.48
49220--49253	16	2.1	16	88	0	50	35	8	23	32	1.86
57282--57361	38	2.1	39	88	2	117	43	10	6	40	1.63
63008--63075	21	3.2	21	66	22	61	39	2	7	50	1.46
62996--63081	42	2.1	42	86	2	120	46	2	5	45	1.40
63022--63097	15	5.3	15	69	15	61	42	1	3	52	1.28
63007--63098	42	2.2	42	96	1	168	42	2	5	50	1.37
65586--65684	51	1.9	51	89	0	153	33	28	16	22	1.95
71088--71183	19	4.9	19	72	14	88	33	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76363--76405	2	22.0	2	95	4	79	48	0	0	51	1.00
83045--83096	18	2.9	18	75	11	52	25	3	0	71	1.03
85991--86041	16	3.4	16	86	10	72	15	11	3	68	1.34
87651--87815	76	2.2	75	85	4	215	30	1	11	56	1.45
92681--92730	5	10.2	5	81	12	59	78	0	2	20	0.86
92681--92737	14	3.9	14	82	8	69	77	0	3	19	0.92
92681--92730	9	5.1	10	79	11	59	78	0	2	20	0.86
92681--92735	19	2.9	19	83	0	56	78	0	3	18	0.90
92866--92919	25	2.2	24	86	3	72	38	9	0	51	1.34
92849--92925	22	3.3	24	80	10	88	41	7	0	50	1.31
95186--95234	16	3.0	16	77	16	64	57	0	24	18	1.41
95176--95232	17	3.3	17	79	18	64	61	1	21	15	1.43
95206--95258	26	2.0	26	85	7	72	58	0	24	16	1.38
95186--95250	33	2.0	33	85	11	89	58	0	24	16	1.38
96662--96705	2	23.5	2	82	13	58	50	2	0	47	1.13
97133--97811	86	8.0	86	81	6	703	24	17	21	35	1.95
97141--97777	172	3.8	172	81	6	780	24	17	21	35	1.95
97411--97566	75	2.1	75	84	4	199	23	19	21	35	1.96
97151--97814	333	2.0	332	87	2	947	24	17	21	35	1.95
98949--99209	95	2.7	95	89	3	371	32	18	16	32	1.93
103234--103293	23	2.6	23	91	0	93	16	25	28	30	1.97
106836--106876	21	2.0	21	95	0	73	26	19	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111245--111283	12	3.3	12	82	7	53	79	0	0	20	0.73
111245--111294	20	2.5	20	90	6	75	78	0	0	22	0.76
111245--111294	10	5.0	10	77	18	59	78	0	0	22	0.76
111477--111539	26	2.4	26	94	0	108	60	0	25	14	1.34
111477--111538	9	7.1	9	75	18	60	59	0	25	14	1.35
111467--111503	17	2.2	18	85	9	51	62	0	21	16	1.33
111477--111538	17	3.6	18	75	14	67	59	0	25	14	1.35
111643--111719	2	38.5	2	100	0	154	50	0	0	49	1.00
113014--113067	2	27.5	2	92	3	92	50	1	0	48	1.11
114184--114216	15	2.2	15	100	0	66	42	6	24	27	1.78
114323--114348	6	4.3	6	100	0	52	0	0	46	53	1.00
115161--115211	21	2.4	21	78	21	61	47	0	1	50	1.12
119824--119901	31	2.5	31	87	0	102	24	25	15	34	1.95
122003--122039	2	18.5	2	100	0	74	51	0	48	0	1.00
122503--122566	31	2.1	31	90	0	101	35	14	28	21	1.92
125560--125713	77	2.0	78	85	8	208	39	11	4	44	1.60
125753--125784	2	16.0	2	100	0	64	50	0	0	50	1.00
133160--133193	16	2.1	16	100	0	68	29	8	11	50	1.69
134831--134868	18	2.2	17	86	9	51	52	13	15	18	1.74
134877--134961	36	2.4	36	86	2	118	36	10	25	27	1.89
134956--135010	18	3.3	18	66	23	57	45	16	14	23	1.84
134964--135017	17	3.4	17	66	23	53	48	11	12	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134959--135038	31	2.6	31	97	0	151	47	13	12	26	1.79
137077--137116	21	1.9	21	85	10	55	27	7	0	65	1.20
137250--137299	26	1.9	26	84	8	66	20	8	6	66	1.40
137303--137338	18	1.9	19	88	5	56	19	8	2	69	1.27
148658--148889	106	2.2	106	83	6	294	34	23	18	23	1.96

Tables:   1

The End!