genome.fa.s1458.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001458.1 Hibiscus syriacus cultivar Beakdansim tig00002813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  210874

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150246--150310	31	2.1	31	88	0	94	56	6	9	27	1.54
151327--151391	31	2.1	31	85	0	85	53	7	9	29	1.60
153037--153135	40	2.4	40	88	3	135	28	13	19	39	1.89
153111--153223	48	2.4	46	78	7	122	26	12	15	45	1.82
153493--153555	27	2.4	27	91	2	110	42	7	14	34	1.75
156932--157025	24	4.0	24	79	8	102	24	14	19	41	1.89
157211--157239	14	2.0	15	93	6	51	48	0	10	41	1.37
164949--165050	40	2.5	42	80	7	97	31	24	20	23	1.98
166171--166243	37	2.0	37	83	0	92	49	17	10	21	1.78
167168--167641	55	8.7	53	75	8	245	40	18	9	31	1.82
167168--167423	54	4.7	54	77	2	201	40	19	8	30	1.83
167164--167364	109	1.8	109	80	4	244	41	20	8	28	1.82
167375--167816	55	8.0	55	84	1	539	41	16	9	32	1.81
167358--167770	164	2.5	164	86	0	574	41	16	9	32	1.80
169117--169192	29	2.7	29	89	2	118	23	2	32	40	1.69
169441--169479	20	2.0	20	100	0	78	35	17	10	35	1.84
170415--170586	85	2.0	85	91	0	281	31	15	20	31	1.94
170947--170988	13	3.4	12	84	12	50	4	21	0	73	1.01
170965--170996	4	7.8	4	93	6	55	0	25	0	75	0.81
175966--176019	24	2.2	24	93	0	90	20	3	42	33	1.70
176105--176195	3	31.3	3	89	6	143	63	1	1	34	1.09
176283--176429	42	3.5	41	84	3	177	36	14	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176282--176447	42	4.0	42	81	1	172	34	16	17	31	1.92
176369--176525	41	3.8	41	76	5	127	39	19	12	28	1.88
176433--176547	41	2.8	41	80	5	124	42	18	10	28	1.83
185806--185850	23	2.0	23	82	8	56	75	4	4	15	1.12
187142--187203	32	1.9	33	86	3	90	14	16	29	40	1.88
203612--203662	20	2.5	20	90	6	77	29	31	13	25	1.94

Tables:   1   2

The End!