genome.fa.s1482.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001482.1 Hibiscus syriacus cultivar Beakdansim tig00002878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170297

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1681--1764	44	1.9	43	87	2	123	30	20	20	28	1.97
3280--3320	21	2.0	21	90	0	64	4	36	17	41	1.71
4310--4348	20	2.0	20	94	0	69	30	30	15	23	1.95
7190--7317	31	4.1	31	77	6	132	33	21	17	28	1.95
7193--7310	62	1.9	62	87	5	175	31	21	17	29	1.96
15701--15751	26	2.0	26	84	7	68	50	1	0	47	1.12
15711--15751	13	3.1	14	77	22	52	51	0	0	48	1.00
16156--16189	2	17.0	2	87	0	50	47	0	5	47	1.26
16439--16479	20	2.0	20	95	0	73	36	9	0	53	1.34
35321--35485	89	1.8	91	88	5	255	36	18	16	27	1.93
45727--45800	3	24.3	3	97	2	139	33	0	0	66	0.92
47895--47993	29	3.3	29	67	10	90	42	5	16	36	1.70
47892--48017	62	2.0	62	100	0	252	41	4	15	38	1.68
48055--48085	15	2.1	15	93	0	53	54	0	0	45	0.99
48070--48126	27	2.1	27	93	0	96	49	5	3	42	1.42
48120--48159	20	2.0	21	90	5	64	37	5	2	55	1.35
48767--48817	22	2.4	21	81	12	59	37	31	13	17	1.89
52431--52473	16	2.7	16	92	0	68	34	41	6	16	1.75
53650--53764	27	4.3	27	100	0	230	34	10	13	40	1.79
58850--58883	12	2.8	12	100	0	68	17	44	23	14	1.86
58912--59094	29	6.2	29	82	5	215	27	4	19	48	1.69
62546--62660	27	4.3	27	100	0	230	34	10	13	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67749--67782	12	2.8	12	100	0	68	17	44	23	14	1.86
67811--67993	29	6.2	29	82	5	215	27	4	19	48	1.69
71332--71361	15	1.9	16	93	6	53	40	6	16	36	1.75
71498--71598	31	3.3	31	95	0	184	33	15	15	34	1.90
75044--75073	15	1.9	16	93	6	53	40	6	16	36	1.75
75210--75279	31	2.3	31	94	0	122	34	15	15	34	1.90
77183--77238	19	2.9	19	97	0	103	32	26	16	25	1.96
79196--79236	21	2.0	21	90	0	64	51	7	7	34	1.58
81951--82023	31	2.4	31	100	0	146	47	19	15	17	1.82
85490--85595	46	2.3	46	95	0	185	31	18	15	34	1.92
87150--87336	29	6.4	29	83	5	218	25	3	20	50	1.64
87151--87335	86	2.1	87	82	6	232	25	3	20	51	1.62
91175--91223	25	2.0	24	84	11	64	42	6	4	46	1.47
91354--91464	14	7.9	14	70	18	61	24	0	27	47	1.52
91355--91422	21	3.2	21	95	0	118	23	0	26	50	1.50
91354--91424	7	10.1	7	73	19	51	22	0	28	49	1.50
91352--91499	42	3.5	41	78	15	135	27	0	27	45	1.59
91397--91466	28	2.5	27	79	6	86	25	0	28	45	1.54
94142--94182	20	2.1	19	86	4	55	24	7	7	60	1.48
94876--94939	12	5.4	12	77	3	58	26	12	23	37	1.90
94896--94978	23	3.3	23	68	18	67	27	18	24	30	1.98
94929--94961	17	1.9	17	93	0	57	27	15	24	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94893--94982	29	3.3	29	62	17	66	28	17	25	27	1.98
96480--96551	36	2.0	36	100	0	144	36	30	11	22	1.89
100382--100409	12	2.3	12	100	0	56	42	17	7	32	1.77
105187--105229	3	14.3	3	100	0	86	34	0	0	65	0.93
105411--105582	89	1.9	89	92	0	290	23	16	16	43	1.88
105502--105777	105	2.6	105	89	3	401	24	20	15	39	1.91
105716--106337	136	4.6	136	92	1	977	25	21	18	34	1.96
111827--112006	64	2.8	62	77	9	177	26	16	26	30	1.96
112017--112056	21	1.9	21	94	0	71	22	15	30	32	1.94
112830--112910	24	3.6	23	77	14	87	27	22	25	24	2.00
112807--112930	44	2.8	42	74	12	115	24	20	28	27	1.99
118762--118922	64	2.5	64	81	5	189	26	16	23	33	1.96
118884--118923	21	1.9	21	94	0	71	22	15	30	32	1.94
119235--119271	19	1.9	19	94	0	65	24	35	27	13	1.93
127120--127186	21	3.2	21	100	0	134	28	10	26	34	1.90
127203--127245	22	2.0	22	85	0	59	23	25	25	25	2.00
132454--132520	21	3.2	21	100	0	134	28	10	26	34	1.90
132537--132579	22	2.0	22	85	0	59	23	25	25	25	2.00
136887--136913	14	1.9	14	100	0	54	25	14	22	37	1.93
139763--139806	24	1.9	22	81	9	52	38	0	2	59	1.10
139780--139856	30	2.4	30	85	10	91	42	0	0	57	0.99
139803--139856	18	3.2	17	74	15	58	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141580--141688	42	2.6	42	82	2	121	21	34	21	22	1.96
141663--141712	21	2.4	21	83	12	75	18	32	28	22	1.97
142234--142339	34	3.1	34	87	1	160	51	5	4	37	1.46
142742--143524	127	6.2	127	94	0	1361	32	22	24	20	1.98
143664--143726	19	3.3	19	97	0	117	33	26	30	9	1.88
143803--143847	6	7.8	6	80	14	51	33	2	0	64	1.06
143804--143856	17	3.1	16	80	17	54	33	3	0	62	1.13
152765--152806	20	2.1	20	86	0	57	35	21	11	30	1.90
155540--155655	8	15.9	7	81	13	71	52	0	0	47	1.00
155582--155655	2	37.5	2	94	2	132	50	0	0	50	1.00
155668--155718	12	4.3	12	90	5	77	27	50	13	7	1.69
155653--155718	23	2.8	24	81	4	80	27	46	15	10	1.78
156248--156314	3	21.7	3	93	6	116	64	0	0	35	0.94
157156--157261	29	3.7	27	87	6	113	59	10	10	19	1.59
158315--158501	40	4.4	41	71	15	148	23	17	33	25	1.96
158386--159018	83	7.4	85	70	15	310	23	17	33	25	1.96
158304--159018	129	5.5	129	89	0	1027	23	17	33	25	1.96
159127--159307	33	5.3	32	68	16	114	38	11	16	33	1.85
159143--159264	36	3.5	36	70	15	101	40	10	16	31	1.83
159140--159348	69	3.0	69	92	0	337	38	11	17	33	1.85
159179--159306	33	3.8	33	77	11	141	36	11	18	32	1.87
159212--159342	36	3.7	36	74	6	115	40	12	16	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159078--159460	69	5.6	67	79	11	288	39	13	19	27	1.89
159179--159460	66	4.2	65	83	7	250	37	13	20	28	1.90
159528--159751	36	6.4	36	77	12	234	38	15	21	24	1.92
159487--159751	137	1.9	137	92	0	440	38	14	21	25	1.91
159546--159733	101	1.9	101	89	4	299	37	14	21	26	1.92
160174--160395	117	1.9	117	95	0	399	24	18	24	32	1.97
160748--160835	32	2.7	31	81	6	95	34	22	12	30	1.91
161851--161900	22	2.3	22	82	6	57	4	6	4	86	0.80
161851--161900	23	2.2	22	82	3	55	4	6	4	86	0.80
164136--164339	33	6.1	33	76	17	188	13	8	33	43	1.75
164170--164259	42	2.1	42	87	4	128	10	11	40	38	1.74
164251--164312	28	2.2	28	94	0	106	16	8	33	41	1.77
164218--164339	61	2.0	59	93	3	208	15	8	31	44	1.76
166372--166405	2	17.0	2	100	0	68	0	50	0	50	1.00
166608--166672	27	2.5	25	80	9	85	56	21	13	7	1.62

Tables:   1

The End!