genome.fa.s1484.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001484.1 Hibiscus syriacus cultivar Beakdansim tig00002880_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1039362

Tables:   1   2   3   4   

This is table  4  of  4  ( 472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755640--755682	16	2.9	15	82	6	52	60	0	9	30	1.28
755638--755681	14	3.0	15	84	12	56	59	0	11	29	1.32
760501--760559	23	2.6	23	88	0	82	22	27	25	25	2.00
760523--760567	23	2.0	23	90	0	72	17	24	26	31	1.97
762921--762951	2	15.5	2	100	0	62	48	0	0	51	1.00
765841--765887	24	2.0	24	82	0	58	48	0	10	40	1.38
765894--765940	21	2.2	21	96	0	85	44	4	14	36	1.65
765920--766000	31	2.6	31	84	3	101	45	9	16	28	1.79
766163--766314	5	30.4	5	100	0	304	60	0	0	39	0.97
767649--767681	2	16.5	2	100	0	66	48	0	0	51	1.00
767871--767909	2	19.5	2	100	0	78	48	0	0	51	1.00
771823--771906	13	6.4	13	75	6	71	83	5	10	0	0.81
771831--771887	18	3.3	17	81	18	73	84	5	10	0	0.77
771826--771906	22	3.9	20	76	16	76	82	6	11	0	0.83
771823--771906	31	2.6	31	83	14	100	83	5	10	0	0.81
771823--771907	34	2.5	34	80	12	95	82	5	11	0	0.83
773498--774761	106	12.0	106	91	2	1998	34	25	18	22	1.96
773896--774051	43	3.4	43	71	17	145	33	24	19	22	1.97
773939--774088	51	3.1	51	70	14	154	33	26	17	23	1.96
775512--775615	37	2.8	37	89	0	154	41	14	13	30	1.84
776071--776099	2	14.5	2	100	0	58	48	0	0	51	1.00
776174--776200	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
776351--776386	19	1.9	18	88	5	54	30	2	2	63	1.22
776401--776446	14	3.4	14	73	14	51	34	2	0	63	1.07
776328--776433	28	3.8	29	68	27	68	33	3	1	61	1.25
776380--776461	22	3.8	21	78	12	67	34	4	0	60	1.18
776377--776438	24	2.5	25	79	10	74	37	3	0	59	1.13
776398--776452	18	3.2	16	78	12	56	32	1	0	65	1.03
782855--782887	16	2.1	16	100	0	66	36	12	18	33	1.88
782973--783044	26	2.9	26	87	6	96	38	8	6	45	1.61
787569--787692	47	2.6	47	93	5	223	29	19	22	29	1.98
788345--788406	26	2.5	26	89	7	94	40	3	9	46	1.53
788345--788416	26	2.9	25	82	10	85	37	4	9	48	1.55
788535--788564	11	2.8	11	95	5	53	6	16	0	76	0.99
792198--792296	48	2.0	51	86	5	141	43	2	5	49	1.36
792210--792291	9	8.7	9	70	14	58	40	1	4	53	1.30
792752--792776	9	2.8	9	100	0	50	92	0	0	8	0.40
794500--794537	18	2.2	17	86	9	51	18	2	0	78	0.86
799701--799741	21	2.0	21	90	4	66	41	14	17	26	1.88
800872--800898	3	9.0	3	100	0	54	66	0	33	0	0.92
801840--801879	21	2.0	21	90	5	64	35	5	7	52	1.51
803056--803082	13	2.1	13	100	0	54	22	14	11	51	1.73
818611--818671	21	3.2	21	65	29	64	31	4	21	42	1.74
818603--818722	35	3.3	36	91	5	190	30	5	20	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
823229--823289	21	3.2	21	65	29	64	31	4	21	42	1.74
823221--823339	35	3.3	37	88	8	174	31	5	19	43	1.72
827232--827290	19	3.1	19	85	7	75	40	6	11	40	1.68
828116--828310	32	6.1	32	94	1	338	34	21	17	26	1.95
838204--838236	7	4.9	7	88	7	50	81	0	0	18	0.68
845820--845883	21	3.2	19	75	16	74	32	20	20	26	1.97
845820--845894	19	3.7	19	75	13	69	36	20	20	24	1.95
845890--845942	21	2.5	21	87	0	79	16	20	30	32	1.95
846196--846242	18	2.4	21	82	10	64	48	6	2	42	1.40
847260--847367	18	6.2	17	75	11	76	43	13	10	32	1.78
848370--848424	27	2.0	29	82	13	71	56	9	3	30	1.48
849943--850025	31	2.8	31	76	18	86	32	18	4	44	1.70
858391--858418	6	4.7	6	100	0	56	28	0	35	35	1.58
859630--859738	54	2.0	55	98	1	211	32	25	18	23	1.97
864468--864794	126	2.6	124	97	2	615	32	20	25	21	1.98
867764--867802	12	3.2	12	88	3	60	43	0	0	56	0.99
869030--869068	17	2.4	17	95	4	71	51	5	0	43	1.24
870324--870711	185	2.1	183	89	3	584	45	8	3	43	1.50
871395--871433	16	2.4	16	91	0	60	41	0	12	46	1.42
871367--871507	73	1.9	73	88	0	210	33	4	17	45	1.67
871468--871504	16	2.3	16	95	0	65	40	8	13	37	1.74
886022--886063	17	2.4	18	88	4	59	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
886817--886863	21	2.3	20	85	10	60	36	17	8	38	1.80
886828--886872	21	2.1	21	83	0	54	31	13	6	48	1.68
887443--887481	6	6.5	6	100	0	78	0	66	0	33	0.92
892988--893019	16	2.0	16	100	0	64	43	25	6	25	1.77
898880--898933	27	2.0	27	86	10	76	70	5	3	20	1.23
900588--900639	18	2.9	18	94	0	95	28	32	21	17	1.96
911424--911825	214	1.9	214	90	0	651	34	14	18	32	1.91
911855--911989	42	3.2	43	89	7	199	23	17	23	35	1.95
912359--912505	53	2.8	53	91	3	233	29	20	28	21	1.98
917870--917914	23	2.0	23	82	8	56	26	17	2	53	1.56
918235--918286	18	2.9	18	88	0	86	28	32	19	19	1.96
919060--919097	20	1.9	20	94	0	67	26	23	18	31	1.97
919094--919246	65	2.4	63	81	6	182	26	22	16	34	1.95
931303--931450	72	2.0	73	86	1	208	33	20	16	29	1.95
938083--938111	13	2.2	13	100	0	58	41	6	0	51	1.28
943330--943462	20	6.6	20	71	8	81	41	22	20	15	1.90
943531--943764	6	39.0	6	98	0	414	33	49	2	14	1.56
949921--950158	21	11.4	21	72	16	158	37	23	18	21	1.94
949917--950177	42	6.3	42	84	5	350	36	23	18	21	1.95
949914--950177	84	3.2	84	89	5	394	36	23	18	22	1.95
949942--950183	21	11.6	20	72	18	117	36	23	18	21	1.95
957432--957460	14	2.0	15	93	6	51	44	0	6	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964887--964971	25	3.5	25	80	12	88	43	1	18	36	1.58
966397--966432	17	2.1	17	100	0	72	33	22	13	30	1.93
967079--967117	18	2.2	18	90	0	60	20	35	28	15	1.93
970321--970408	22	4.0	22	86	0	122	15	42	26	15	1.88
970321--970408	44	2.0	43	91	2	140	15	42	26	15	1.88
971125--971176	26	2.0	26	96	0	95	23	25	7	44	1.79
978363--978475	29	3.9	29	97	0	208	57	0	0	42	0.98
979216--979254	17	2.4	17	91	4	62	48	7	5	38	1.54
980530--980577	11	4.5	10	80	12	51	70	2	6	20	1.19
980530--980577	22	2.2	21	85	3	60	70	2	6	20	1.19
981196--981224	10	2.9	10	100	0	58	51	0	0	48	1.00
984529--984580	2	27.0	2	92	7	90	48	0	0	51	1.00
985124--985230	47	2.3	47	79	3	137	27	40	12	20	1.88
989385--989450	22	3.0	22	100	0	132	27	22	22	27	1.99
991497--991555	31	1.9	31	86	13	86	62	0	1	35	1.05
1009282--1009316	18	2.0	17	88	5	52	60	0	0	40	0.97
1015083--1015153	35	2.0	35	94	0	124	12	36	2	47	1.56
1029121--1029163	18	2.4	18	100	0	86	37	6	16	39	1.75
1036309--1036515	6	33.0	6	66	21	70	72	0	18	7	1.14
1036333--1036458	27	4.3	29	73	11	91	72	0	18	8	1.15
1036344--1036457	10	11.5	10	68	20	62	71	0	17	9	1.17
1036443--1036512	33	2.2	31	84	5	86	74	1	18	5	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1037743--1037814	37	2.0	36	91	2	117	37	23	20	18	1.94
1037878--1038080	55	3.7	53	80	9	212	28	17	23	31	1.97

Tables:   1   2   3   4

The End!