Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001498.1 Hibiscus syriacus cultivar Beakdansim tig00002923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132042

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12583--12615
17
1.9
17
93
0
57
45
6
9
39
1.61
15121--15189
33
2.1
33
83
5
86
31
1
36
30
1.67
19198--19227
12
2.4
13
94
5
53
0
23
0
76
0.78
19582--19650
33
2.1
33
83
5
86
31
1
36
30
1.67
24419--24458
6
7.0
6
78
21
50
0
17
0
82
0.67
24421--24453
16
2.1
16
94
5
59
0
15
0
84
0.61
24422--24461
15
2.4
18
88
12
59
0
17
0
82
0.67
24640--24709
20
3.4
20
71
21
63
60
1
21
17
1.44
24624--24720
42
2.3
42
98
0
185
60
1
21
16
1.41
26827--26856
6
5.2
6
96
4
53
83
0
16
0
0.65
31533--31592
30
2.0
31
83
3
77
28
10
10
51
1.67
33235--33292
5
11.6
5
72
20
50
81
1
15
1
0.86
35701--35760
30
2.0
31
83
9
79
26
10
10
53
1.66
36658--36708
20
2.6
20
90
3
77
35
15
5
43
1.71
39463--39497
8
4.2
8
92
7
61
0
11
0
88
0.51
39463--39497
17
2.1
17
94
5
63
0
11
0
88
0.51
39437--39494
29
2.0
30
82
3
73
1
15
1
81
0.86
39456--39500
16
2.8
16
87
9
65
0
15
0
84
0.62
39667--39699
16
2.1
17
88
11
52
63
0
15
21
1.30
39677--39731
16
3.4
16
75
24
53
60
0
23
16
1.36
41057--41098
22
1.9
22
85
0
57
42
16
0
40
1.48
43170--43557
59
6.6
59
83
5
453
37
11
21
29
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43170--43817
118
5.5
117
75
10
488
37
11
21
29
1.89
43170--43515
177
2.0
177
89
0
530
36
10
21
30
1.88
43170--43557
177
2.2
177
86
0
526
37
11
21
29
1.88
43549--43718
60
2.8
60
84
4
218
35
15
20
28
1.93
43175--43803
59
10.6
59
78
7
433
37
11
21
29
1.89
43871--44089
44
5.0
44
95
0
375
41
5
17
34
1.74
48698--48999
59
5.1
59
82
5
360
36
11
22
29
1.89
48688--49040
118
3.0
117
83
5
408
37
11
21
30
1.88
48710--49132
177
2.4
178
80
8
409
36
11
22
29
1.89
48986--49160
60
2.9
60
81
5
192
34
12
24
28
1.92
49313--49532
44
5.0
44
92
0
341
40
7
16
35
1.77
52901--52928
2
14.0
2
100
0
56
50
0
0
50
1.00
54383--54421
21
1.9
21
89
5
62
25
15
23
35
1.94
58091--58134
16
2.8
16
86
13
72
59
0
20
20
1.39
59171--59250
35
2.2
36
82
2
90
32
5
37
25
1.77
64059--64100
16
2.6
17
81
7
52
66
0
14
19
1.25
64748--64858
35
3.2
35
84
2
134
29
3
38
27
1.74
74754--74790
6
6.2
6
87
12
58
0
18
0
81
0.70
74987--75029
15
2.7
15
82
10
50
60
0
20
18
1.36
76010--76639
58
10.9
58
88
2
908
35
12
17
34
1.87
76542--76735
96
2.0
96
90
4
302
32
13
19
34
1.91
76638--77464
58
14.3
58
91
0
1287
35
12
18
33
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78621--78659
20
2.0
20
90
10
62
61
7
5
25
1.44
78691--78729
20
2.0
19
85
5
51
41
10
17
30
1.83
80869--80915
13
3.8
12
79
17
51
2
19
2
76
0.99
80874--80925
27
1.9
27
84
7
70
1
21
3
73
1.10
80875--80929
19
2.8
20
73
15
53
1
21
3
72
1.09
80855--80936
18
4.7
18
68
24
68
4
19
4
70
1.24
81253--81291
20
1.9
21
84
5
53
33
0
38
28
1.57
81628--81678
19
2.6
20
84
3
68
43
5
13
37
1.69
84182--84319
59
2.6
52
79
14
163
22
17
21
38
1.93
84213--84330
59
2.0
59
93
0
200
25
18
21
34
1.96
89846--89957
35
3.2
35
85
1
152
33
3
35
27
1.74
117805--117858
27
2.0
27
96
0
99
61
11
12
14
1.58
131563--131610
16
2.9
16
81
6
51
64
0
20
14
1.28

Tables:   1

The End!