genome.fa.s1500.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001500.1 Hibiscus syriacus cultivar Beakdansim tig00002942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  222393

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467--845	151	2.5	150	85	11	531	48	5	5	39	1.50
2148--2290	60	2.4	60	77	5	137	33	16	13	36	1.88
9123--9155	17	2.1	16	88	11	50	36	3	0	60	1.12
26465--26548	43	2.0	43	92	0	141	55	21	2	20	1.54
29346--29385	10	4.0	10	90	0	62	50	0	0	50	1.00
41689--41713	3	8.3	3	100	0	50	32	0	0	68	0.90
44516--44566	22	2.4	22	93	3	86	13	17	50	17	1.77
52285--52310	2	13.0	2	100	0	52	50	0	0	50	1.00
59573--59735	60	2.7	59	84	7	195	35	13	15	34	1.87
60404--60436	16	2.0	17	88	5	50	12	18	33	36	1.88
64188--64241	28	1.9	28	82	14	67	44	25	20	9	1.81
64238--64296	31	1.9	31	89	0	91	40	20	10	28	1.85
66611--66672	25	2.4	25	81	10	72	53	0	4	41	1.22
66611--66671	27	2.4	26	84	10	74	54	0	4	40	1.22
66667--66721	20	2.6	22	83	13	80	52	0	0	47	1.00
66928--67033	39	2.7	38	76	16	110	47	2	15	34	1.60
69087--69145	20	3.2	20	84	15	83	42	0	0	57	0.98
69107--69298	30	6.2	30	87	8	278	47	1	1	50	1.15
69107--69298	15	12.4	15	85	8	242	47	1	1	50	1.15
69278--69429	32	5.4	31	71	28	151	36	0	10	52	1.36
69306--69397	22	3.7	22	71	25	76	36	0	10	52	1.37
69196--69353	69	2.3	67	83	10	189	44	1	4	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69278--69903	54	11.4	54	80	13	667	33	0	13	53	1.41
69456--69733	32	8.7	32	75	16	281	32	0	14	52	1.42
69550--69610	26	2.4	24	100	0	86	22	0	21	55	1.43
69327--69701	138	2.8	134	81	7	495	32	0	14	52	1.42
69627--69669	22	2.0	22	95	0	77	37	0	11	51	1.39
69760--69871	32	3.7	32	78	18	148	31	0	15	53	1.42
69278--69839	192	2.9	190	81	11	643	32	0	14	53	1.41
69851--69893	22	2.0	22	100	0	86	34	0	13	51	1.42
69377--69903	192	2.7	189	74	14	551	32	0	14	53	1.42
75528--75600	2	36.5	2	100	0	146	50	0	0	49	1.00
79057--79086	15	2.0	15	100	0	60	13	26	46	13	1.80
87609--87644	2	18.0	2	100	0	72	50	0	0	50	1.00
90462--90541	30	2.6	31	78	2	90	42	6	11	40	1.66
91804--91933	65	2.0	65	100	0	260	38	6	10	44	1.64
96512--96539	13	2.2	13	100	0	56	39	14	39	7	1.73
96588--96640	2	26.5	2	100	0	106	0	0	49	50	1.00
98006--98158	60	2.5	60	79	2	155	43	5	15	34	1.71
112905--113247	166	2.1	166	98	0	661	24	25	13	36	1.92
115308--115346	20	2.0	20	100	0	78	23	30	25	20	1.98
117061--117098	19	2.0	19	100	0	76	42	36	5	15	1.70
117103--117190	4	22.0	4	88	0	122	23	4	25	46	1.71
117828--119598	150	11.8	150	98	0	3426	34	17	14	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120829--120855	14	1.9	14	100	0	54	51	0	0	48	1.00
120861--120898	15	2.5	15	83	8	51	44	0	0	55	0.99
121400--121433	3	11.3	3	100	0	68	64	0	0	35	0.94
121543--121580	18	2.1	18	95	0	67	50	26	0	23	1.50
123715--123814	52	1.9	52	89	4	157	30	12	21	37	1.89
130495--130540	19	2.4	19	85	0	56	73	6	0	19	1.04
130494--130556	21	3.0	21	77	13	58	69	6	0	23	1.11
140963--140988	5	5.2	5	100	0	52	23	57	19	0	1.40
146568--146731	82	2.0	81	97	1	310	48	10	9	31	1.70
146928--146971	20	2.2	20	87	0	61	40	29	22	6	1.80
148826--148893	21	3.2	21	79	10	59	32	11	29	26	1.92
157546--157631	23	3.7	23	80	11	113	23	32	20	23	1.98
157535--157626	46	2.0	46	95	0	166	26	30	19	23	1.98
157526--157651	23	5.7	22	75	16	66	25	30	22	22	1.99
160674--160741	31	2.2	31	89	0	100	45	20	17	16	1.85
164439--164499	32	1.9	32	89	0	95	34	14	13	37	1.85
164980--165075	22	4.3	23	76	7	83	32	18	19	29	1.96
168243--168309	33	2.1	32	86	5	91	41	2	19	35	1.67
173505--173554	17	3.1	17	77	11	59	48	0	0	52	1.00
173462--173554	42	2.3	42	85	7	129	48	0	0	51	1.00
177888--177937	8	6.2	8	77	9	57	60	0	0	40	0.97
177906--177935	15	2.0	15	93	0	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177888--177971	40	2.1	40	84	4	107	54	0	2	42	1.13
177982--178038	13	4.4	13	76	12	55	45	1	1	50	1.22
180499--180545	20	2.3	20	85	7	60	44	0	8	46	1.33
180508--180546	20	2.0	20	90	5	62	38	0	7	53	1.30
186931--187021	3	29.3	3	73	16	71	37	2	1	59	1.17
186934--187020	16	5.4	16	76	20	76	37	2	1	58	1.18
186942--187022	17	4.9	17	76	18	73	38	1	1	59	1.13
187101--187152	24	2.2	24	83	6	63	34	38	19	7	1.80
204436--204471	17	2.1	18	94	5	65	27	8	5	58	1.50
205000--205058	30	1.9	31	86	10	86	57	6	5	30	1.46
215399--215426	8	3.5	8	100	0	56	39	0	10	50	1.37
218878--218907	9	3.3	9	100	0	60	90	0	0	10	0.47
218848--218925	9	9.0	9	76	18	51	75	0	12	11	1.04
218872--218915	16	2.8	15	86	6	61	84	0	4	11	0.77
219824--220244	54	7.9	55	85	6	526	29	15	28	26	1.96

Tables:   1

The End!