genome.fa.s1531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001531.1 Hibiscus syriacus cultivar Beakdansim tig00003002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134643

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298--396	39	2.6	38	80	10	105	2	28	10	59	1.41
325--395	37	1.9	37	85	5	99	1	30	8	59	1.36
354--459	51	2.1	51	83	15	132	2	35	5	55	1.38
6127--6176	23	2.2	23	82	7	57	58	14	2	26	1.47
9379--9440	27	2.3	26	91	5	97	69	0	20	9	1.16
18413--18604	9	21.4	9	75	18	81	76	0	18	5	0.96
18423--18528	31	3.5	30	79	11	110	76	0	17	5	0.98
18413--18530	22	5.8	21	75	20	67	76	0	18	5	0.97
18406--18593	8	22.4	8	73	15	100	77	0	17	5	0.96
18432--18604	6	29.0	6	74	13	85	77	0	17	5	0.95
18421--18593	53	3.1	54	84	12	203	76	0	17	5	0.97
18434--18604	65	2.5	67	82	10	197	77	0	16	5	0.94
19700--19908	44	4.8	44	82	4	242	34	13	21	31	1.92
19686--19910	87	2.6	88	88	1	326	35	13	21	29	1.92
21966--22384	137	3.1	136	81	8	409	32	22	14	30	1.94
22579--22603	3	8.3	3	100	0	50	32	0	0	68	0.90
22855--22894	12	3.3	12	100	0	80	10	40	25	25	1.86
23881--23908	2	14.0	2	100	0	56	50	0	0	50	1.00
25000--25037	16	2.2	18	86	9	53	44	0	15	39	1.47
25420--25468	23	2.1	23	100	0	98	20	22	24	32	1.98
26875--26904	15	2.0	15	93	0	51	36	6	0	56	1.26
29726--29775	21	2.4	21	80	6	66	22	26	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29765--29816	21	2.5	21	81	3	61	40	17	21	21	1.91
29805--29919	20	5.7	19	76	9	77	36	24	16	22	1.94
30086--30129	22	2.0	22	100	0	88	22	45	13	18	1.84
30392--30450	20	3.0	20	87	0	73	15	18	22	44	1.87
30587--30641	25	2.2	24	78	15	58	20	9	18	52	1.71
31770--31835	18	3.7	18	91	0	105	27	43	12	16	1.83
33765--33838	39	1.9	38	91	8	123	51	17	20	10	1.75
33765--33838	19	3.8	19	92	3	121	51	17	20	10	1.75
33855--33911	14	3.7	14	75	20	60	12	21	22	43	1.85
33850--33930	33	2.5	33	100	0	162	11	20	22	45	1.82
33869--33956	19	4.8	19	82	14	123	11	21	20	46	1.82
34501--34574	20	3.7	20	85	3	112	20	20	18	40	1.92
34503--34639	41	3.3	40	77	7	112	27	16	22	32	1.96
34564--34638	21	3.5	22	85	3	100	34	14	26	24	1.94
35101--35142	22	1.9	22	85	0	57	54	11	2	30	1.49
35896--35937	17	2.5	17	80	7	50	35	0	2	61	1.09
38390--38475	30	2.9	30	79	8	104	37	3	9	50	1.52
38394--38491	30	3.3	30	79	8	76	36	5	10	47	1.59
39090--39147	30	2.0	29	86	10	82	65	3	0	31	1.09
44409--44450	15	2.6	16	81	11	50	47	2	0	50	1.14
45725--45749	12	2.1	12	100	0	50	40	0	60	0	0.97
58286--58354	25	2.8	25	90	0	120	27	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58393--58427	13	2.6	13	95	4	61	34	34	0	31	1.58
72218--72251	16	2.1	16	89	10	52	76	0	14	8	1.01
73291--73378	43	2.1	41	83	6	106	22	32	19	25	1.97
73167--73555	130	2.9	132	81	6	417	27	29	18	24	1.98
91004--91050	22	2.1	22	92	0	76	38	6	10	44	1.65
96720--96851	51	2.6	51	83	4	142	17	32	32	17	1.93
97026--97078	18	2.9	18	85	0	61	24	16	5	52	1.65
97019--97081	9	6.9	9	74	1	54	26	17	4	50	1.66
97019--97081	27	2.3	27	86	2	81	26	17	4	50	1.66
97408--97547	55	2.6	55	87	5	200	47	2	2	47	1.29
98496--98535	19	2.1	19	90	0	62	25	15	25	35	1.94
99783--99853	36	2.0	36	85	0	97	19	16	16	46	1.84
100049--100111	23	2.7	23	85	0	81	41	12	14	31	1.83
100582--100832	125	2.0	125	94	1	441	40	7	15	36	1.75
103590--103615	13	2.0	13	100	0	52	0	0	15	84	0.62
110712--110743	14	2.3	14	94	0	55	21	18	43	15	1.87
110985--111033	2	24.5	2	100	0	98	48	0	0	51	1.00
112141--112212	32	2.2	32	88	9	103	23	26	26	23	2.00
114370--114427	24	2.4	24	76	0	62	27	13	18	39	1.89
114496--114667	57	3.0	57	89	0	254	18	19	27	34	1.95
115588--115726	69	2.0	70	90	1	217	36	12	14	35	1.85
128217--128304	20	4.3	20	78	2	104	34	22	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128208--128298	41	2.2	41	86	0	119	34	20	15	29	1.94
128298--128480	20	9.1	20	82	11	214	42	24	14	19	1.88
130109--130154	22	2.1	22	80	8	58	63	0	0	36	0.95
131527--131570	3	15.0	3	85	4	63	61	0	0	38	0.96
131790--132832	112	9.3	113	87	4	1271	29	19	13	37	1.91
132142--132186	23	1.9	23	82	13	56	15	26	6	51	1.68
131790--132832	113	9.3	112	87	5	1242	29	19	13	37	1.91
131790--132832	335	3.1	334	84	3	1282	29	19	13	37	1.91
133637--134180	90	6.0	92	88	8	696	36	20	13	29	1.92

Tables:   1

The End!