genome.fa.s1563.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001563.1 Hibiscus syriacus cultivar Beakdansim tig00003096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  849978

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 555 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675530--675559	15	2.1	14	93	6	51	13	40	16	30	1.87
676840--676887	15	3.4	14	80	11	53	31	0	2	66	1.03
680519--680552	18	1.9	17	88	5	50	0	0	32	67	0.91
685251--685275	13	1.9	13	100	0	50	40	36	8	16	1.77
686019--686287	54	5.1	54	84	4	350	25	19	21	33	1.97
686019--686282	104	2.5	107	83	6	356	25	19	22	32	1.97
688177--688225	3	16.3	3	100	0	98	32	0	0	67	0.91
692635--692677	21	2.0	21	90	0	68	41	4	13	39	1.66
696019--696187	62	2.8	60	80	12	184	31	6	14	46	1.70
698152--698633	55	8.8	55	92	0	748	34	10	19	34	1.87
700703--700748	2	23.0	2	100	0	92	50	0	0	50	1.00
703938--704412	55	8.6	55	90	3	706	33	11	19	36	1.87
705585--705623	11	3.6	11	89	3	62	56	0	0	43	0.99
715347--715385	18	2.4	16	87	12	53	33	2	41	23	1.68
715949--716796	199	4.3	200	79	11	984	29	15	14	40	1.87
716278--716648	179	2.1	179	92	0	607	29	15	14	40	1.88
721140--721260	66	1.9	64	87	5	181	22	40	1	35	1.64
723585--724100	183	2.8	184	91	2	842	28	14	14	42	1.85
725045--725106	18	3.5	18	69	10	56	30	0	4	64	1.14
731028--731103	21	3.6	21	90	0	107	19	26	18	35	1.95
731091--731244	20	7.7	20	88	1	236	36	18	20	24	1.95
731419--731480	18	3.0	22	70	18	60	25	37	16	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731848--731897	20	2.5	20	90	0	73	18	18	28	36	1.94
731882--731919	20	1.9	20	100	0	76	10	10	21	57	1.61
731884--731927	20	2.2	20	87	0	61	13	11	20	54	1.69
733803--733946	20	7.5	20	80	9	165	40	18	18	22	1.91
733826--733891	34	1.9	34	90	0	105	43	19	19	16	1.88
733993--734166	20	9.4	20	77	16	151	16	18	21	42	1.89
733974--734167	40	5.4	35	74	16	155	15	20	21	42	1.89
733974--734169	107	1.8	107	95	0	356	15	19	21	42	1.88
734646--734750	21	5.0	21	75	3	95	20	35	19	24	1.96
736110--736145	14	2.6	14	90	0	54	30	0	22	47	1.52
736258--736342	33	2.5	33	90	1	125	43	17	23	15	1.87
736352--736512	20	8.7	20	71	14	78	15	22	21	39	1.91
736357--736452	33	2.9	34	88	3	140	13	23	20	41	1.88
736426--736512	40	2.2	40	91	4	140	18	21	24	35	1.95
736500--736526	14	1.9	14	100	0	54	7	22	29	40	1.81
738909--738962	24	2.2	24	90	0	81	42	18	18	20	1.89
739776--739833	20	2.9	20	87	5	64	22	24	20	32	1.98
739786--739912	20	6.3	20	83	3	148	20	20	19	39	1.93
746624--746663	19	2.0	21	85	9	57	52	5	0	42	1.23
748133--748179	3	15.7	3	84	8	60	68	2	0	29	1.02
748372--748720	131	2.6	131	84	4	427	24	16	31	28	1.96
748730--749049	65	5.0	64	80	4	324	42	13	20	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748732--749049	128	2.4	130	81	3	363	42	13	21	22	1.88
749163--749290	36	3.6	37	82	5	156	38	9	19	32	1.84
767546--767584	3	12.7	3	89	5	51	69	0	0	30	0.89
767547--767595	19	2.5	20	83	16	66	71	0	2	26	0.97
767885--768016	43	3.1	42	70	20	114	21	18	32	27	1.97
767879--768070	83	2.3	83	86	1	251	20	18	33	27	1.96
768086--768407	64	5.0	65	82	5	366	41	13	20	25	1.88
768318--768368	15	3.5	15	67	5	50	35	13	21	29	1.92
768086--768433	65	5.4	63	79	11	293	40	13	20	25	1.89
768504--768632	36	3.5	36	76	13	102	38	7	20	32	1.82
768521--768649	36	3.6	36	74	13	113	39	11	19	29	1.87
769834--769906	17	4.5	16	72	16	53	2	16	2	78	0.99
769820--769900	32	2.7	30	77	19	87	1	19	3	75	1.02
776014--776130	53	2.2	53	85	0	162	44	26	7	21	1.79
777016--777066	25	2.0	25	88	0	75	49	1	13	35	1.54
781697--781745	25	2.0	25	87	0	71	12	10	4	73	1.22
782155--782285	66	2.0	66	81	0	154	32	26	13	26	1.94
787984--788147	65	2.5	66	85	2	208	29	25	15	29	1.96
787984--788181	65	3.0	65	81	4	177	31	24	14	30	1.94
801459--801499	20	2.0	20	85	4	55	36	0	21	41	1.54
803424--803491	34	2.0	34	82	5	84	61	4	17	16	1.49
806836--806878	14	2.9	14	78	21	52	39	6	13	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
806839--806886	14	3.3	14	80	8	51	39	6	14	39	1.71
806950--807025	23	3.3	22	76	7	71	22	21	23	32	1.98
807016--807071	24	2.4	24	82	8	71	30	23	16	30	1.96
810701--810743	6	7.2	6	83	0	59	76	2	4	16	1.05
816946--816970	10	2.5	10	100	0	50	24	20	12	44	1.85
831120--831158	18	2.1	18	85	4	51	28	23	15	33	1.95
834396--834437	21	2.0	21	90	4	68	42	14	16	26	1.86
843164--843233	29	2.4	31	81	11	85	27	2	0	70	1.02
843212--843239	8	3.5	8	100	0	56	21	0	0	78	0.75

Tables:   1   2   3   4   5

The End!