Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001568.1 Hibiscus syriacus cultivar Beakdansim tig00003103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  302910

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235052--235122
8
8.0
8
73
17
52
36
1
2
59
1.21
235048--235102
20
2.8
20
81
5
69
34
1
3
60
1.25
240472--240657
31
6.0
31
96
1
329
19
18
22
39
1.93
244900--245084
31
6.0
31
96
1
327
20
19
22
38
1.94
246715--246766
22
2.4
22
96
0
95
38
13
23
25
1.91
256796--256823
2
14.0
2
100
0
56
50
0
0
50
1.00
270412--270454
21
2.0
21
86
0
59
30
27
25
16
1.97
272276--272320
23
2.0
23
86
0
63
20
26
26
26
1.99
279231--279255
7
3.6
7
100
0
50
28
28
28
16
1.97
279244--279308
22
3.0
22
88
0
94
12
21
44
21
1.85
279305--279373
9
7.3
9
83
4
75
27
27
28
15
1.96
279311--279394
9
8.7
10
78
10
70
29
26
25
19
1.98
279318--279393
29
2.6
30
87
6
102
31
25
25
18
1.97
279305--279394
19
4.7
19
76
10
76
28
25
26
18
1.98
286609--286641
12
2.8
12
100
0
66
12
24
45
18
1.83
286592--286647
17
3.6
17
77
22
77
12
23
46
17
1.82
286592--286647
29
1.9
29
100
0
112
12
23
46
17
1.82
286645--286722
19
4.1
19
77
14
88
26
28
26
17
1.98
286643--286721
10
8.3
9
80
6
77
26
27
29
16
1.97
286644--286721
29
2.7
27
75
13
68
26
28
28
16
1.97
290145--290182
19
2.0
19
94
0
67
21
7
21
50
1.74
290590--290672
36
2.3
38
85
8
111
33
4
18
43
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
293595--293639
23
2.0
23
86
0
63
26
28
24
20
1.99
293618--293920
148
2.0
149
98
0
590
35
20
16
27
1.94
294395--294542
66
2.3
65
87
8
212
17
25
26
30
1.97
294395--294565
66
2.6
65
83
9
179
18
25
25
30
1.98
295021--295055
19
1.9
19
88
11
56
65
0
31
2
1.07
300575--300863
139
2.0
143
88
8
432
35
20
16
27
1.94
301339--301486
67
2.2
66
92
2
244
16
25
28
29
1.97
301339--301486
66
2.2
64
89
4
215
16
25
28
29
1.97
301963--302008
24
1.9
24
91
8
76
63
0
32
4
1.14

Tables:   1   2

The End!