genome.fa.s1576.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001576.1 Hibiscus syriacus cultivar Beakdansim tig00003132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83600

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1193--1256	30	2.1	31	97	2	121	42	4	6	46	1.49
3988--4107	32	3.9	30	85	8	152	35	21	17	25	1.95
20060--20163	51	2.0	51	100	0	208	43	13	19	24	1.86
24725--24751	2	13.5	2	100	0	54	48	0	0	51	1.00
25951--26026	2	38.5	2	97	2	145	50	0	0	50	1.00
26318--26371	20	2.7	19	75	8	63	33	31	18	16	1.93
26356--26453	21	4.7	21	71	15	69	37	20	20	21	1.94
26421--26470	20	2.5	20	93	0	82	46	24	16	14	1.83
26482--26691	20	10.4	20	82	6	228	37	23	19	20	1.94
26439--26669	81	2.9	81	84	5	247	38	23	18	19	1.93
26482--26691	40	5.2	40	89	4	289	37	23	19	20	1.94
26459--26697	20	11.9	19	72	13	126	36	23	18	21	1.95
27550--27603	24	2.2	24	90	0	81	22	18	18	40	1.91
30016--30070	20	2.8	20	91	0	83	32	23	21	21	1.98
30042--30160	33	3.5	33	83	2	121	43	18	22	15	1.87
30320--30356	14	2.6	14	91	0	65	45	21	0	32	1.52
31402--31454	19	2.8	19	94	0	88	9	18	22	49	1.76
31469--31509	20	2.0	20	85	0	55	17	14	12	56	1.68
32024--32225	20	9.9	20	77	6	210	18	17	25	38	1.93
32026--32233	41	5.1	41	91	1	330	18	17	25	38	1.92
32026--32259	41	5.8	41	89	3	287	18	17	25	38	1.92
32246--32298	20	2.7	20	88	5	72	13	16	24	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32348--32397	20	2.5	19	71	9	55	16	20	32	32	1.94
38437--38531	32	3.1	30	81	11	104	51	3	1	44	1.24
38503--38562	31	1.9	31	86	3	84	48	3	5	43	1.41
38517--38575	31	1.9	31	85	0	82	47	6	5	40	1.52
47112--47261	81	1.9	78	94	4	264	27	10	18	44	1.81
47880--47905	2	13.0	2	100	0	52	50	0	0	50	1.00
47998--48033	19	1.9	19	94	5	65	0	11	8	80	0.90
51580--51693	31	3.7	30	79	6	86	50	7	4	37	1.52
52391--52461	33	2.2	33	82	5	81	43	11	21	23	1.84
59134--59201	2	34.0	2	100	0	136	50	0	0	50	1.00
59192--59516	38	8.7	36	78	12	281	46	1	6	45	1.36
59260--59309	26	1.9	26	84	8	66	46	4	6	44	1.47
59182--59442	121	2.2	122	84	6	329	46	1	6	45	1.37
59317--59554	69	3.3	68	81	11	196	47	1	7	43	1.40
59192--59562	37	9.9	37	75	16	241	46	1	6	45	1.39
61785--61817	16	2.1	16	100	0	66	27	6	18	48	1.71
70249--70305	24	2.4	25	85	14	75	61	1	1	35	1.17
70249--70315	23	2.8	24	78	13	75	58	1	1	38	1.17
70834--70889	26	2.2	25	81	12	62	37	5	0	57	1.22
72805--72876	36	2.0	36	94	0	126	41	5	8	44	1.58
76208--76261	17	3.3	16	79	10	56	22	33	27	16	1.95

Tables:   1

The End!