genome.fa.s1577.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001577.1 Hibiscus syriacus cultivar Beakdansim tig00003137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  426047

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220005--220090	42	2.1	40	84	4	109	25	17	23	33	1.96
220464--220775	161	1.9	159	92	1	516	31	19	28	21	1.97
220463--220777	53	5.9	53	88	1	468	30	20	27	20	1.98
220943--221024	9	8.7	9	71	10	56	29	0	1	69	0.96
220947--221005	3	20.0	3	74	10	50	30	0	1	67	1.00
224752--224792	18	2.3	18	100	0	82	48	17	17	17	1.81
226301--226326	12	2.2	12	100	0	52	0	50	0	50	1.00
226367--226512	40	3.7	40	96	0	256	55	14	2	27	1.53
226381--226487	14	8.0	13	70	18	62	57	14	1	25	1.47
226813--226859	23	2.1	22	84	4	58	36	12	19	31	1.89
227614--227676	23	2.7	23	92	0	99	38	20	4	36	1.74
228076--228154	38	2.1	38	92	0	131	16	13	20	49	1.79
228415--228451	18	2.1	18	89	0	56	51	10	5	32	1.60
229073--229124	23	2.3	22	90	6	77	44	19	1	34	1.62
229083--229145	23	2.7	23	90	0	90	38	19	6	36	1.77
229751--231106	195	6.9	199	96	1	2490	31	16	16	35	1.91
229751--231106	197	6.9	198	96	2	2468	31	16	16	35	1.91
231224--231266	18	2.5	17	81	7	59	58	11	2	27	1.46
233058--233123	33	2.0	33	87	0	96	24	48	0	27	1.51
233157--233221	21	3.1	21	80	6	69	15	29	15	40	1.88
235447--235489	20	2.3	18	85	14	61	20	16	11	51	1.75
235452--235498	20	2.4	19	82	10	67	19	17	10	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235620--235665	20	2.3	20	89	10	76	17	17	10	54	1.70
237484--237549	28	2.4	27	85	10	80	56	6	9	28	1.54
237726--237759	17	2.1	17	88	5	52	41	2	0	55	1.15
241602--241642	22	1.9	22	85	5	57	41	29	21	7	1.80
241601--241650	22	2.3	21	75	3	55	42	30	22	6	1.77
245234--245264	13	2.4	13	94	0	53	25	35	22	16	1.94
247553--247597	23	2.0	23	86	0	63	31	8	6	53	1.58
249866--249914	22	2.3	22	86	10	66	59	2	0	38	1.09
249873--249959	31	2.8	32	76	3	95	55	5	0	39	1.24
249865--249917	24	2.4	20	82	17	61	60	1	0	37	1.08
249994--250061	30	2.3	29	85	7	84	51	0	1	47	1.09
250007--250055	20	2.6	19	81	12	66	53	0	0	46	1.00
251140--251203	31	2.0	32	84	3	85	21	1	43	32	1.62
253935--253972	10	3.9	10	82	6	51	28	2	2	65	1.19
254512--254573	27	2.3	27	82	0	79	48	22	14	14	1.80
255685--255717	17	1.9	17	93	0	57	45	12	9	33	1.73
261583--261628	18	2.6	18	96	0	83	26	23	10	39	1.88
270848--270876	13	2.2	13	100	0	58	44	13	24	17	1.85
277519--277565	24	2.0	24	82	0	58	27	31	23	17	1.96
282503--282531	13	2.2	13	100	0	58	48	20	17	13	1.81
283828--283857	14	2.1	14	100	0	60	43	6	0	50	1.28
291761--294070	233	9.9	232	77	9	2103	32	15	17	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292095--292191	42	2.3	42	78	5	117	28	22	19	28	1.98
292784--292865	42	2.0	42	85	9	114	25	14	23	36	1.93
292845--292886	21	2.0	21	85	0	57	28	16	28	26	1.97
292952--293020	35	2.0	35	97	0	129	46	8	11	33	1.71
292037--293827	948	1.9	948	86	2	2583	32	15	17	34	1.92
294391--294677	133	2.2	133	88	3	416	29	24	16	29	1.96
300616--300649	11	3.1	11	100	0	68	52	0	20	26	1.46
301890--301945	22	2.6	22	75	13	71	33	21	12	32	1.91
305936--305976	22	2.0	20	86	13	57	19	19	36	24	1.95
308602--308659	23	2.5	23	88	0	89	27	22	25	24	2.00
312457--312496	21	1.9	21	90	10	64	32	7	5	55	1.50
314566--314591	11	2.4	11	100	0	52	26	7	30	34	1.85
318820--318871	15	3.5	15	75	0	50	42	9	21	26	1.83
319012--319106	24	3.9	24	85	2	109	23	24	22	30	1.99
319002--319096	24	3.9	24	85	1	118	22	25	23	29	1.99
320031--320069	18	2.2	18	100	0	78	43	10	15	30	1.80
325963--326224	131	2.0	131	95	0	470	34	12	21	30	1.91
333700--334814	81	13.8	81	89	1	1655	30	23	11	33	1.91
334975--335232	57	4.5	57	91	1	401	35	18	10	36	1.84
337276--337308	2	16.5	2	100	0	66	48	0	0	51	1.00
340943--340993	15	3.4	16	78	10	54	43	7	19	29	1.79
341124--341194	25	2.9	24	82	2	97	18	23	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341842--343435	575	2.8	572	83	6	1920	38	15	15	30	1.89
346714--346880	68	2.5	67	80	7	185	35	7	14	42	1.74
346774--346825	14	3.6	14	69	5	50	25	5	21	48	1.72
346846--346904	29	2.0	29	93	0	100	33	10	10	45	1.72
346767--346903	68	2.0	67	90	4	213	36	8	13	41	1.74
349188--349351	84	2.0	84	90	0	256	43	14	15	26	1.85
351148--351202	18	3.2	16	76	16	56	23	7	7	61	1.47
363717--363788	17	4.1	16	81	18	74	80	0	9	9	0.91
363738--363800	10	6.3	10	77	18	69	80	0	11	7	0.89
363744--363800	11	5.5	11	77	12	66	80	0	10	8	0.90
363738--363800	20	3.1	20	82	10	83	80	0	11	7	0.89
363721--363806	37	2.3	37	86	13	115	79	0	11	9	0.95
363738--363813	28	3.1	25	80	16	72	78	0	13	7	0.94
363729--363806	21	4.1	19	81	14	81	79	0	11	8	0.93
364687--364996	136	2.3	136	90	0	494	34	17	21	26	1.96
364976--365025	16	2.9	17	75	24	52	48	18	18	16	1.82
366661--366715	18	3.2	16	76	16	56	23	7	7	61	1.47
376220--376269	24	2.1	24	81	7	57	42	20	12	26	1.86
376266--376305	19	2.1	19	85	0	53	30	17	22	30	1.97
381181--381216	19	1.9	19	88	5	56	61	19	0	19	1.35
381189--381226	19	2.0	20	85	10	53	52	21	5	21	1.66
381225--381267	11	3.9	11	84	0	50	30	20	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381226--381290	33	2.0	33	90	0	103	32	21	16	29	1.96
382503--382604	7	14.6	7	74	11	57	23	0	25	50	1.49
382494--382615	21	5.8	21	74	7	97	23	0	28	47	1.52
382503--382615	14	8.1	14	71	9	70	23	0	27	49	1.50
382496--382605	28	3.9	28	76	10	98	24	0	26	49	1.51
386107--386134	5	5.6	5	100	0	56	82	0	17	0	0.68
388308--388383	27	2.9	27	94	2	127	31	11	56	0	1.35
392716--393170	118	3.8	117	82	4	518	23	20	15	40	1.90
394152--394192	4	11.0	4	80	15	52	0	19	0	80	0.71
394152--394192	18	2.2	18	91	4	64	0	19	0	80	0.71
406476--406780	154	2.0	154	93	1	522	35	21	12	30	1.91
414004--414031	2	14.0	2	100	0	56	50	0	0	50	1.00
417403--417449	15	3.1	15	87	6	60	44	0	0	55	0.99
417425--417532	3	36.0	3	85	10	150	64	0	0	35	0.94
417675--418305	113	5.6	112	89	6	795	29	20	13	37	1.90
418939--419652	83	8.7	83	92	3	1142	36	21	13	27	1.91
418938--419652	243	2.9	244	92	3	1150	36	22	13	27	1.91
420769--420806	10	3.7	10	89	6	58	0	10	0	89	0.49
420769--420806	11	3.4	11	96	3	67	0	10	0	89	0.49
420767--420809	9	4.4	9	86	11	50	0	13	0	86	0.58

Tables:   1   2

The End!