genome.fa.s1595.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001595.1 Hibiscus syriacus cultivar Beakdansim tig00003177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60168

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3269--3315	20	2.2	22	85	7	62	17	2	4	76	1.04
6061--8282	271	8.3	271	79	6	2125	34	16	21	26	1.95
6061--8282	407	5.5	406	81	5	2196	34	16	21	26	1.95
6061--7667	136	11.8	136	85	2	1949	35	16	21	26	1.94
8070--8338	136	2.0	134	85	2	360	34	17	21	26	1.95
9989--10046	21	2.8	20	81	7	62	15	1	5	77	1.02
11501--11557	20	2.8	20	83	5	69	15	1	5	77	1.03
14323--16868	136	18.7	136	84	1	3028	34	16	22	27	1.95
14323--27769	272	49.8	272	75	8	9159	34	17	20	27	1.95
14323--21751	408	18.3	406	80	4	7311	34	16	21	27	1.95
16765--16998	119	2.0	119	95	0	423	35	17	20	27	1.94
16882--21745	136	35.9	136	81	3	4727	34	16	20	28	1.95
18854--19084	122	1.9	122	93	0	399	34	16	17	32	1.92
21598--21937	187	1.8	186	83	1	448	31	20	20	26	1.98
21747--23296	136	11.5	136	82	4	1688	33	18	20	27	1.96
21747--27769	408	15.0	408	79	6	5473	34	17	20	27	1.95
23181--23418	123	1.9	123	84	3	318	33	18	20	28	1.96
23815--24058	124	2.0	122	81	3	283	35	16	20	27	1.94
24238--27769	136	26.2	136	79	5	3273	34	17	20	27	1.95
26798--27765	135	7.1	136	81	3	898	34	16	22	27	1.95
31492--31522	14	2.3	13	94	5	53	22	22	19	35	1.96
32510--32565	27	2.0	27	82	3	67	50	17	12	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34200--34345	76	1.9	76	79	9	163	42	4	9	43	1.58
42619--42682	33	2.0	33	96	3	121	32	17	15	34	1.91
46594--46630	13	2.9	13	85	14	51	27	2	0	70	1.01
51337--51384	24	2.0	23	84	11	62	33	10	8	47	1.68
52515--52792	130	2.2	125	84	5	344	38	14	13	33	1.85
54947--55007	3	19.7	3	90	6	95	65	0	0	34	0.93
55270--55773	134	3.8	133	78	4	458	31	14	21	31	1.93
55270--55754	269	1.8	267	79	7	568	31	14	21	32	1.93
56112--56210	41	2.4	42	82	1	110	28	23	24	24	2.00
57673--57716	22	2.0	23	81	4	54	47	27	2	22	1.63

Tables:   1

The End!