genome.fa.s163.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000163.1 Hibiscus syriacus cultivar Beakdansim tig00000287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  301105

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180110--180152	13	3.4	13	81	12	54	16	9	0	74	1.06
180092--180160	24	3.0	21	73	20	59	17	8	0	73	1.07
180166--180207	17	2.5	17	84	11	59	19	9	4	66	1.38
180252--180300	17	3.0	15	82	11	53	22	4	2	71	1.13
180249--180299	26	2.0	26	84	7	68	21	5	1	70	1.18
180279--180318	20	2.1	19	86	13	55	17	10	0	72	1.11
180253--180323	29	2.4	28	78	19	74	19	8	1	70	1.21
181280--181321	4	10.5	4	100	0	84	23	0	0	76	0.79
183257--183337	21	4.0	22	68	23	79	19	40	27	12	1.87
183285--183314	15	2.0	15	100	0	60	26	33	26	13	1.93
183263--183335	36	2.0	37	89	2	112	20	38	27	13	1.90
183363--183404	20	2.1	20	100	0	84	14	42	28	14	1.84
183440--183481	21	2.0	21	95	0	75	23	21	28	26	1.99
183510--183549	20	1.9	22	90	10	66	37	37	10	15	1.80
183764--183833	34	2.1	32	84	5	86	34	15	27	22	1.95
186779--186808	15	2.0	15	100	0	60	26	33	26	13	1.93
186857--186898	21	2.0	21	95	0	75	14	40	28	16	1.88
186934--186975	21	2.0	21	95	0	75	23	21	28	26	1.99
187004--187043	20	1.9	22	90	10	66	37	37	10	15	1.80
187258--187327	34	2.1	32	86	5	95	34	15	28	21	1.94
188077--188127	25	2.0	27	84	7	70	15	7	7	68	1.37
198592--198681	2	46.5	2	85	14	127	45	1	1	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198796--198836	13	3.2	13	80	13	50	14	9	0	75	1.04
198852--198893	17	2.5	17	84	11	59	19	9	4	66	1.38
210677--210702	6	4.3	6	100	0	52	65	0	0	34	0.93
211206--211260	22	2.5	22	96	0	101	47	16	20	16	1.83
214586--215097	4	127.8	4	86	1	452	28	5	46	19	1.73
215015--219327	4	1090.2	4	97	2	8263	49	0	24	25	1.50
229358--229414	29	2.0	28	86	3	78	38	12	12	36	1.80
229574--229613	19	2.0	20	85	9	55	62	0	0	37	0.95
236082--236137	28	2.0	29	82	3	69	53	5	7	33	1.51
236530--236568	20	2.0	20	90	10	62	30	25	0	43	1.55
236609--236670	29	2.1	31	90	6	101	30	1	4	62	1.25
242455--242522	30	2.3	30	84	0	82	22	4	36	36	1.74
242468--242549	30	2.7	30	88	1	119	19	3	39	37	1.69
245873--245977	19	5.2	19	80	13	111	35	5	27	31	1.80
246382--246431	25	2.0	25	100	0	100	24	24	28	24	2.00
246576--246662	20	4.3	20	69	16	81	22	18	31	27	1.97
246537--246662	60	2.1	60	96	0	234	26	18	28	26	1.98
246647--246683	19	1.9	19	88	0	56	21	13	29	35	1.92
247117--247176	31	2.0	30	86	3	84	31	1	3	63	1.20
248494--248555	25	2.5	25	97	0	115	25	16	12	45	1.83
248989--249187	95	2.1	95	87	6	305	32	18	14	35	1.91
253985--254036	11	4.5	11	77	17	61	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255874--256025	55	2.8	55	83	0	187	25	16	23	35	1.95
267331--267379	19	2.6	19	96	0	89	24	26	28	20	1.99
272422--272467	24	1.9	24	90	0	74	34	26	23	15	1.94
272500--272558	23	2.6	23	81	2	66	37	23	22	16	1.94
272659--272760	45	2.3	45	84	0	132	34	22	9	33	1.87
281252--281334	23	3.8	22	73	10	71	26	26	24	22	2.00
287180--287304	64	2.0	64	93	0	214	16	21	28	32	1.95
289792--290212	43	9.8	41	72	19	170	25	22	6	45	1.76
289883--289956	34	2.1	36	85	5	98	25	22	8	43	1.81
289883--290059	87	1.9	91	84	13	240	24	23	6	44	1.77
289917--290017	53	1.9	53	85	4	141	22	23	6	46	1.76
289833--290102	131	2.0	131	83	8	332	24	23	6	45	1.76
289963--290239	43	6.4	44	80	7	266	27	22	6	44	1.76
290947--291006	20	3.1	20	77	18	56	61	1	0	36	1.06
290960--291021	18	3.2	20	78	19	62	61	0	1	37	1.06
291069--291118	12	4.3	12	75	14	52	68	2	0	30	1.01

Tables:   1   2

The End!