genome.fa.s1644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001644.1 Hibiscus syriacus cultivar Beakdansim tig00003293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121710

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433--487	22	2.5	22	100	0	110	36	27	12	23	1.91
895--934	18	2.1	20	86	9	57	20	7	30	42	1.79
1397--1673	36	8.0	36	76	12	276	25	19	14	40	1.89
1398--1672	70	4.0	70	74	13	275	25	19	14	40	1.89
1423--1718	135	2.2	133	83	6	364	27	18	13	40	1.88
1631--1787	66	2.4	67	84	7	187	33	21	8	37	1.83
2398--3054	104	6.3	105	88	4	893	33	26	17	22	1.96
2398--3055	209	3.2	209	87	4	895	33	26	17	22	1.96
3595--3696	34	2.9	36	91	5	172	44	13	14	27	1.83
3992--4036	23	2.0	24	86	8	67	17	8	4	68	1.32
4132--4219	8	10.8	8	73	16	56	18	3	1	77	0.97
4132--4187	20	3.1	17	77	20	60	21	1	0	76	0.87
4136--4191	22	2.7	20	78	21	62	23	1	0	75	0.90
4120--4178	30	2.0	31	87	12	88	25	3	0	71	1.02
4126--4217	46	2.0	45	81	10	107	19	4	1	75	1.04
4154--4285	45	2.9	43	73	15	106	18	6	2	72	1.17
4178--4260	22	3.6	22	77	11	69	15	7	2	74	1.14
4143--4240	50	2.0	49	80	11	110	20	5	1	73	1.08
8305--8381	37	2.1	37	95	0	136	40	20	9	29	1.83
18885--18936	2	25.5	2	92	3	86	46	1	0	51	1.12
27793--27841	18	2.7	18	90	0	80	20	24	28	26	1.99
28238--28277	21	1.9	21	85	10	55	57	0	17	25	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33274--33323	3	17.0	3	84	12	68	34	0	0	66	0.92
38965--39006	20	2.1	20	90	0	66	28	19	11	40	1.87
39661--39697	13	2.9	13	88	11	51	70	13	10	5	1.32
40862--40918	12	4.9	12	83	12	66	50	28	0	21	1.48
40874--40919	4	12.0	4	90	9	78	50	26	0	23	1.50
41555--41639	36	2.4	36	84	4	109	30	21	11	36	1.89
41910--42060	29	5.4	27	82	8	162	28	9	13	47	1.75
41913--42045	29	4.8	28	87	6	182	28	10	15	45	1.79
41913--42045	56	2.4	56	85	7	182	28	10	15	45	1.79
42140--42246	30	3.4	29	70	19	90	33	10	13	42	1.77
42109--42299	64	3.0	67	87	6	270	31	12	12	43	1.79
42400--42621	120	1.9	118	81	9	272	31	13	11	43	1.80
42521--42644	63	2.0	62	87	1	176	31	14	10	43	1.79
42626--42705	40	2.0	40	85	4	108	31	20	12	36	1.89
42746--42806	31	2.0	30	81	12	70	34	14	9	40	1.79
43087--43166	35	2.2	37	82	8	94	41	20	8	30	1.82
43444--43729	43	6.6	44	71	11	171	26	30	19	22	1.98
43430--43719	130	2.2	129	90	1	463	27	30	20	22	1.98
43430--43768	130	2.6	129	86	3	457	27	29	19	23	1.98
43967--44021	3	18.0	3	81	10	67	32	0	0	67	0.91
43967--44021	15	3.6	16	87	7	78	32	0	0	67	0.91
45064--45110	20	2.4	19	80	16	51	25	2	14	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47862--47903	23	1.9	21	90	9	66	50	2	0	47	1.14
48039--48085	23	2.1	23	84	7	62	51	0	0	48	1.00
48039--48101	23	2.8	22	77	13	58	47	0	3	49	1.17
48280--48346	24	2.8	23	84	4	71	47	0	1	50	1.10
55323--55357	3	12.0	3	93	6	63	68	31	0	0	0.90
63919--64081	65	2.5	64	88	7	233	28	18	23	29	1.98
65032--65082	21	2.5	20	90	9	77	39	27	5	27	1.79
66519--66578	31	2.0	31	86	3	86	26	10	11	51	1.69
67356--67387	3	11.0	3	93	6	57	31	0	0	68	0.90
70399--70452	24	2.2	24	100	0	108	22	14	24	38	1.91
71135--71179	23	2.0	23	90	0	72	28	28	20	22	1.98
71147--71194	17	2.7	18	83	3	62	31	27	14	27	1.95
71255--71284	15	1.9	16	93	6	53	46	0	0	53	1.00
77409--77470	31	2.2	28	83	13	74	17	22	29	30	1.97
78137--78505	20	18.5	20	84	4	449	34	26	18	20	1.96
79179--79225	24	2.0	24	87	8	69	25	14	21	38	1.92
79400--79424	12	2.1	12	100	0	50	72	0	28	0	0.86
81730--82055	19	18.4	19	80	15	405	47	17	20	14	1.82
81730--82055	33	9.2	34	82	13	321	47	17	20	14	1.82
81758--82077	161	2.0	157	93	3	552	46	16	21	14	1.83
81758--82077	52	6.0	52	93	4	550	46	16	21	14	1.83
82084--82185	19	5.6	19	85	12	151	14	23	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82292--82328	14	2.6	14	91	0	65	45	21	0	32	1.52
82323--82395	12	6.0	12	67	20	53	57	16	1	24	1.47
82309--82381	38	1.9	38	97	0	137	53	16	1	28	1.51
84254--84310	14	3.7	14	77	20	60	45	22	21	10	1.82
84235--84327	33	2.8	33	95	0	168	47	21	20	10	1.80
84198--84332	19	7.6	19	75	16	119	46	22	19	11	1.81
84328--84456	19	7.3	19	75	17	125	8	17	28	45	1.77
84328--84419	33	2.8	33	93	3	150	7	18	28	45	1.76
84500--84879	93	4.1	93	99	0	753	46	18	12	22	1.83
84500--84879	185	2.0	186	99	0	753	46	18	12	22	1.83
86582--86671	14	5.7	14	74	23	81	42	23	25	8	1.83
86574--86688	33	3.5	33	95	0	212	45	20	24	9	1.81
86581--86693	19	6.8	18	72	23	88	43	22	24	9	1.83
86705--86759	14	3.6	14	73	21	56	9	25	23	41	1.83
86689--86759	33	2.2	33	94	0	124	8	22	25	43	1.81
86700--86781	33	2.5	33	89	2	119	9	25	21	42	1.84
86712--86800	20	4.8	20	72	19	75	12	24	19	43	1.85
86880--86950	33	2.2	33	92	0	115	47	18	22	11	1.80
87132--87186	22	2.5	22	81	0	74	20	16	40	23	1.91
87332--87525	20	9.6	20	82	5	221	19	19	25	35	1.95
87332--87525	60	3.2	60	83	0	253	19	19	25	35	1.95
87518--87594	21	3.7	20	70	13	57	27	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87580--87631	20	2.6	20	96	0	95	21	13	26	38	1.90
88243--88273	14	2.2	14	94	0	53	48	29	0	22	1.51
90432--91260	207	4.0	207	99	0	1606	37	13	16	32	1.88
91181--91264	43	2.0	43	92	0	141	33	10	21	34	1.88
93298--93348	24	2.2	23	89	10	77	62	0	1	35	1.06
95334--95402	34	2.0	34	88	0	102	44	15	4	34	1.67
96628--96709	21	3.8	22	76	15	91	36	21	20	20	1.95
96621--96718	42	2.3	42	94	0	169	35	22	20	21	1.96
96621--96718	21	4.7	19	72	16	79	35	22	20	21	1.96
96792--96842	19	2.7	19	96	0	93	23	21	25	29	1.99
97616--97657	22	1.9	22	85	0	57	45	0	9	45	1.36
100712--100751	16	2.5	16	95	0	71	5	15	32	47	1.66
101751--101899	55	2.7	55	94	0	253	29	20	16	32	1.95
101920--102750	54	15.7	54	83	4	1016	22	22	19	34	1.96
101920--102750	107	7.8	107	85	3	1026	22	22	19	34	1.96
104497--104566	11	6.3	11	75	21	58	5	8	4	81	0.98
106819--106893	6	10.9	7	72	14	50	2	18	0	78	0.86
106809--106892	33	2.7	31	80	12	100	3	17	0	78	0.89
106832--106900	11	6.1	12	77	8	58	2	15	1	79	0.92
106864--106901	19	2.0	19	89	0	58	0	13	2	84	0.73
106809--106893	10	8.2	9	76	15	53	3	17	0	78	0.88
109531--109565	12	2.8	13	91	8	56	51	17	17	14	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109748--109884	21	6.6	21	95	0	177	14	23	21	40	1.90
109751--109884	42	3.2	42	91	1	198	14	23	20	40	1.90
113044--113080	18	2.1	18	89	0	56	35	48	0	16	1.46
113395--113434	16	2.5	16	95	0	71	5	15	32	47	1.66
117559--117604	21	2.2	21	100	0	92	43	15	8	32	1.77
118017--118127	37	3.2	36	78	14	110	45	18	1	34	1.59

Tables:   1

The End!