genome.fa.s1664.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001664.1 Hibiscus syriacus cultivar Beakdansim tig00003332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38363

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275--383	42	2.6	42	85	2	148	23	22	18	34	1.96
295--367	22	3.4	22	68	21	73	21	21	21	34	1.97
609--720	42	2.7	42	77	4	120	25	24	21	28	1.99
317--3885	584	6.1	585	80	5	3834	31	16	18	34	1.93
317--3885	293	12.2	292	81	4	3796	31	16	18	34	1.93
3066--4704	819	2.0	817	84	5	2132	31	15	18	35	1.92
3883--6273	584	4.1	584	83	3	3005	31	15	18	34	1.92
4948--5046	42	2.4	42	79	3	110	27	21	20	31	1.98
3883--6273	291	8.2	290	83	3	2797	31	15	18	34	1.92
6111--6204	42	2.3	42	77	1	100	29	21	19	29	1.97
6009--6506	235	2.1	234	95	0	888	28	16	21	33	1.95
6346--6444	42	2.4	42	77	3	101	26	21	20	32	1.97
6243--19301	584	22.3	584	83	2	15962	31	14	19	34	1.92
6244--22474	293	55.3	292	81	4	16971	31	15	18	34	1.92
7515--7608	42	2.3	42	77	1	100	29	21	19	29	1.97
6243--22474	877	18.4	875	79	5	15711	31	15	18	34	1.92
8689--8792	41	2.5	41	80	1	118	27	20	21	30	1.98
8805--8944	58	2.4	57	80	5	156	36	10	17	36	1.83
11026--11113	42	2.1	42	81	6	99	29	19	21	29	1.98
13360--13453	42	2.3	42	77	1	100	29	21	19	29	1.97
13476--13621	58	2.5	58	75	7	143	37	8	17	35	1.82
14536--14639	41	2.5	41	80	1	118	28	19	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14652--14791	58	2.4	57	77	10	140	35	11	17	35	1.85
19316--19472	59	2.6	59	78	1	143	27	26	15	30	1.96
19816--19853	20	1.9	19	89	5	58	28	26	15	28	1.96
22455--22491	18	2.1	18	100	0	74	35	16	10	37	1.83
22352--22608	133	1.9	133	92	2	426	35	13	16	34	1.88
22644--22720	22	3.7	21	70	15	61	28	15	19	36	1.92
22752--22909	59	2.7	59	81	1	163	27	27	15	29	1.96
23252--23289	20	1.9	19	89	5	58	28	26	15	28	1.96
23706--23825	61	2.0	61	94	0	213	35	25	11	27	1.91
27249--27592	49	7.0	49	90	1	528	24	20	15	40	1.91
30107--30154	20	2.4	20	100	0	96	31	33	6	29	1.82
34325--34612	49	6.0	49	85	4	399	24	20	15	39	1.92
34325--34596	92	2.9	92	87	3	382	24	20	16	38	1.93
34999--35037	19	2.1	19	90	4	62	20	15	20	43	1.88

Tables:   1

The End!