genome.fa.s167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000167.1 Hibiscus syriacus cultivar Beakdansim tig00000293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81704

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4231--4265	17	2.1	17	100	0	70	65	17	11	5	1.43
4262--4337	16	4.8	16	70	12	57	78	2	14	3	1.00
4259--4331	19	3.8	20	72	18	57	79	2	13	4	0.99
4281--4337	17	3.3	17	82	9	62	77	3	14	5	1.08
6422--6647	114	2.0	114	89	0	344	34	15	19	30	1.93
6824--6886	31	2.0	31	90	0	99	36	15	14	33	1.88
9309--9385	22	3.5	22	90	0	127	35	11	12	40	1.80
9900--10223	165	2.0	166	91	2	526	35	13	12	38	1.83
10227--10634	76	5.4	76	97	0	766	22	19	23	34	1.96
10787--10882	3	32.0	3	79	8	106	41	0	0	58	0.98
12058--12109	20	2.6	21	79	14	56	32	1	1	63	1.16
12063--12103	20	2.1	20	86	4	57	29	2	2	65	1.18
12307--12672	139	2.6	138	92	1	606	38	7	9	45	1.64
12706--12746	15	2.6	16	78	17	50	46	2	7	43	1.44
16722--17427	55	12.8	54	86	4	766	31	23	16	28	1.96
16738--17427	165	4.2	165	88	4	896	31	24	16	28	1.96
17445--17516	37	1.9	38	91	2	119	20	22	15	41	1.89
17812--17837	12	2.2	12	100	0	52	26	15	30	26	1.96
18819--18864	25	1.9	25	91	8	78	6	19	0	73	1.04
18825--19048	17	14.5	16	71	24	98	8	19	0	71	1.14
18809--19048	23	10.9	21	66	25	88	8	19	0	71	1.14
18849--19036	24	7.4	26	69	24	95	8	18	0	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18856--18901	25	1.9	23	86	8	65	10	19	2	67	1.31
18825--19047	8	27.9	8	66	27	68	8	19	0	71	1.15
18917--18997	9	8.7	10	72	24	63	11	17	0	71	1.13
18965--19042	32	2.3	32	81	12	86	7	16	0	75	1.02
18931--19047	26	4.6	24	70	27	66	7	17	0	74	1.05
24208--24267	30	2.0	30	93	0	102	30	5	21	43	1.74
24447--24501	20	2.7	21	94	2	94	20	34	18	27	1.95
24866--24935	34	2.1	32	84	5	86	32	14	30	22	1.94
25795--25842	19	2.5	20	82	3	62	52	6	12	29	1.63
27119--27178	30	2.0	30	93	0	102	30	5	21	43	1.74
27329--27383	20	2.7	21	88	2	85	20	32	18	29	1.96
27748--27817	34	2.1	32	86	5	95	31	15	30	22	1.95
31861--32177	150	2.1	150	96	1	582	26	17	21	34	1.96
32145--32189	23	2.0	23	86	0	63	20	26	26	26	1.99
39139--39203	20	3.2	20	93	2	103	44	18	20	16	1.87
39146--39213	20	3.3	21	84	12	88	45	19	17	17	1.86
39582--39674	21	4.5	21	90	2	127	21	21	12	44	1.86
39683--39760	20	3.6	20	72	21	68	14	17	25	42	1.87
39768--39821	20	2.7	19	75	8	63	24	14	33	27	1.94
40855--41093	20	11.9	20	68	10	103	31	22	12	33	1.92
40955--41009	22	2.7	20	76	18	58	27	20	12	40	1.88
41122--41169	20	2.4	19	79	6	51	43	20	4	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42712--42749	20	1.9	20	84	10	51	34	15	18	31	1.92
43141--43196	22	2.5	22	91	0	85	21	19	42	16	1.89
43281--43495	20	10.6	20	67	14	93	35	11	20	31	1.89
43403--43493	40	2.2	42	86	3	123	36	9	24	29	1.88
43455--43534	22	3.7	22	85	5	110	30	13	21	35	1.92
43455--43556	22	4.9	20	83	8	73	30	15	19	34	1.93
43512--43557	19	2.3	20	85	3	58	32	19	19	28	1.96
44571--44627	20	2.8	20	91	0	87	36	15	21	26	1.93
44611--44717	20	5.3	20	89	0	151	27	23	20	28	1.99
44591--44717	40	3.2	39	83	6	130	28	22	21	28	1.99
44591--44717	60	2.1	59	82	5	148	28	22	21	28	1.99
45539--45616	24	3.2	24	87	0	111	23	19	17	39	1.92
45806--45842	14	2.6	14	91	4	56	51	21	21	5	1.68
47873--47907	18	1.9	18	94	0	61	54	25	2	17	1.57
47967--48236	140	1.9	140	97	0	513	28	14	15	42	1.85
48207--48525	20	16.9	20	76	11	260	33	21	18	25	1.97
48218--48486	54	4.9	54	78	6	279	33	23	18	24	1.97
48347--48565	94	2.3	94	88	0	321	34	21	20	24	1.97
48219--48525	114	2.7	114	84	3	365	33	22	18	25	1.97
48367--48505	74	1.9	74	84	0	188	33	21	20	25	1.97
48698--48736	14	2.8	14	92	0	60	46	15	0	38	1.46
49867--49951	42	2.0	42	81	4	100	24	16	38	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50441--50505	20	3.3	20	87	4	80	38	24	16	20	1.93
52410--52460	19	2.7	19	78	6	59	45	21	17	15	1.86
52839--52880	22	1.9	22	90	9	68	23	9	42	23	1.83
53056--53142	20	4.3	20	88	0	120	22	19	26	31	1.98
53053--53203	40	3.7	40	73	7	126	26	19	25	28	1.99
53559--53602	2	22.0	2	100	0	88	50	0	0	50	1.00
57300--57349	20	2.5	20	87	3	66	38	16	6	40	1.73
57561--57617	18	2.9	19	82	12	71	49	8	10	31	1.68
59384--59524	65	2.2	66	87	2	196	21	19	26	32	1.97
62915--62951	14	2.4	16	86	8	51	32	13	0	54	1.40
63245--63328	23	3.7	23	90	0	123	30	25	25	19	1.98
66854--66904	20	2.6	20	84	3	68	41	17	1	39	1.61
72515--72576	32	2.0	32	87	3	90	25	8	32	33	1.85

Tables:   1

The End!