genome.fa.s1681.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001681.1 Hibiscus syriacus cultivar Beakdansim tig00003359_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140752

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116411--116449	20	1.9	21	84	5	53	28	0	0	71	0.86
116409--116467	30	1.9	31	83	10	77	27	1	1	69	1.07
117268--117311	22	2.1	22	83	8	56	36	27	22	13	1.92
117826--117862	19	1.9	20	88	5	58	13	5	5	75	1.15
118020--118086	31	2.2	30	79	12	84	22	5	7	64	1.42
118427--118459	6	5.5	6	100	0	66	15	33	0	51	1.43
118868--118980	3	37.7	3	92	0	190	34	2	0	62	1.09
118979--119023	20	2.3	19	84	3	54	62	2	0	35	1.08
120371--120408	19	2.1	19	95	5	69	18	5	5	71	1.25
120441--120482	19	2.2	20	86	4	59	42	2	2	52	1.27
121218--121254	15	2.7	15	88	12	53	24	5	8	62	1.44
131830--131911	11	7.2	11	73	14	60	81	0	15	2	0.79
131835--131912	16	4.9	16	74	16	58	83	0	14	2	0.75
131830--131912	28	3.0	26	76	11	85	81	0	15	2	0.78
131837--131911	12	6.3	12	75	21	70	82	0	14	2	0.77
131835--131913	41	1.9	42	84	7	108	82	0	15	2	0.78
132996--133644	83	7.9	83	92	1	1031	29	13	20	36	1.91
134202--134660	111	4.2	111	95	2	793	37	13	18	30	1.90
134202--134660	223	2.1	218	93	2	792	37	13	18	30	1.90
134410--134902	266	1.8	265	93	3	844	36	14	17	31	1.90
134521--134815	158	1.9	156	92	6	504	35	14	17	32	1.90
134681--134902	108	2.0	106	88	6	297	37	13	17	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135220--135316	3	33.0	3	91	4	162	34	2	0	63	1.06
135325--135370	17	2.6	18	80	13	51	69	2	0	28	1.00
136682--136719	19	2.1	19	95	5	69	18	5	5	71	1.25
136687--136728	19	2.2	19	83	8	50	26	2	4	66	1.23
136711--136746	14	2.6	15	87	12	51	27	0	8	63	1.23
136751--136790	20	2.0	20	85	0	53	40	2	2	55	1.27
137596--137625	14	2.1	15	93	6	53	40	3	0	56	1.16
138741--138765	3	8.3	3	100	0	50	36	0	0	64	0.94

Tables:   1   2

The End!