genome.fa.s1739.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001739.1 Hibiscus syriacus cultivar Beakdansim tig00003518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  329412

Tables:   1   2   

This is table  2  of  2  ( 199 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227613--227807	97	2.0	98	89	1	302	49	26	11	12	1.75
228131--228185	17	3.2	17	87	5	67	1	5	45	47	1.36
228131--228168	6	6.7	6	87	6	53	0	2	47	50	1.15
229286--229373	45	1.9	45	90	6	142	23	20	9	46	1.79
229259--229373	46	2.5	46	84	4	144	23	19	7	49	1.74
229394--229599	68	3.0	68	91	0	331	28	25	16	30	1.96
229943--230469	59	8.9	59	93	0	822	30	21	14	33	1.93
230803--231009	94	2.2	94	82	0	245	23	23	16	37	1.94
232110--232148	20	2.0	20	100	0	78	51	2	0	46	1.14
232165--232332	30	5.8	30	71	17	97	48	3	4	42	1.41
232165--232232	29	2.3	29	87	10	93	51	2	1	44	1.25
232308--232398	36	2.5	36	85	0	119	45	7	5	41	1.56
232377--232427	15	3.3	15	71	15	50	49	1	5	43	1.38
232362--232503	53	2.6	55	75	8	139	47	3	5	43	1.44
232409--232450	22	2.0	21	90	9	68	52	4	4	38	1.44
232445--232503	21	2.8	21	94	0	100	42	1	6	49	1.39
232566--232716	44	3.4	44	66	18	116	43	9	5	41	1.62
232626--232667	16	2.6	17	81	11	52	40	11	4	42	1.63
232515--232635	64	2.0	61	85	8	165	46	5	7	40	1.56
232870--232895	13	2.0	13	100	0	52	38	0	15	46	1.46
232824--232940	54	2.2	55	89	3	184	41	6	8	43	1.62
233002--233300	13	20.4	15	68	20	152	39	5	6	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232993--233040	24	2.0	24	83	0	60	41	4	2	52	1.32
233121--233201	11	7.2	12	69	21	50	37	6	4	51	1.48
233094--233242	56	2.6	56	93	3	244	36	4	6	51	1.49
233230--233308	18	4.7	18	74	15	78	40	3	5	50	1.42
233380--233525	68	2.1	69	91	5	233	45	7	2	45	1.43
233510--233561	13	3.8	13	78	9	50	42	7	7	42	1.62
233516--233549	15	2.3	15	94	0	59	44	8	5	41	1.60
233510--233591	28	2.9	29	80	10	89	42	4	6	46	1.50
233548--233591	18	2.3	20	88	7	65	43	2	4	50	1.35
233617--233651	17	2.0	18	88	5	54	34	2	2	60	1.26
233822--233857	11	3.3	11	88	0	54	52	13	2	30	1.55
237791--237822	15	2.1	15	94	0	55	6	15	68	9	1.36
239414--239450	17	2.2	17	95	0	65	8	21	51	18	1.72
239394--239424	7	4.4	7	95	0	53	29	29	25	16	1.96
247626--247813	32	6.1	30	77	11	166	31	18	19	30	1.96
247626--247813	63	3.0	63	90	3	285	31	18	19	30	1.96
247629--247814	31	6.0	30	75	8	158	31	18	18	30	1.96
252452--252617	32	5.3	31	79	12	171	31	18	18	30	1.95
252452--252617	63	2.7	63	97	0	307	31	18	18	30	1.95
252455--252623	31	5.4	31	78	12	184	30	18	18	31	1.96
252629--252700	30	2.4	30	90	0	108	23	18	25	33	1.97
265161--265198	20	1.9	20	100	0	76	36	10	28	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265161--265211	20	2.8	18	88	11	61	39	9	27	23	1.86
269323--269382	18	3.4	18	86	9	88	21	16	33	28	1.95
273429--273933	43	11.8	43	88	2	651	33	24	24	17	1.96
273429--273933	128	3.9	127	86	3	665	33	24	24	17	1.96
273429--273933	171	3.0	171	88	1	760	33	24	24	17	1.96
276740--276778	13	3.0	13	88	0	60	20	20	43	15	1.88
281216--281287	27	2.8	26	76	12	69	36	8	2	52	1.46
281516--281550	2	18.0	2	94	5	63	48	0	0	51	1.00
281880--281930	19	2.6	19	84	3	57	35	1	9	52	1.46
283803--283856	23	2.3	24	81	9	67	68	1	3	25	1.16
283816--283892	26	3.2	25	80	12	72	70	2	3	23	1.17
285380--285431	21	2.5	21	100	0	104	19	15	28	36	1.92
285686--285721	18	2.0	18	100	0	72	50	5	11	33	1.61
288271--288316	16	2.9	16	72	21	51	63	26	0	10	1.27
296720--296775	24	2.3	24	75	0	58	57	0	0	42	0.99
296732--296779	24	2.0	24	87	0	69	52	0	0	47	1.00
296732--296806	28	2.9	26	78	16	77	53	0	1	45	1.08
296822--296881	8	7.6	8	75	17	63	61	0	1	36	1.06
296840--296881	15	2.8	15	82	13	59	64	0	0	35	0.94
297493--297872	43	8.9	43	80	7	362	53	6	15	25	1.65
297811--297872	21	2.9	21	76	4	61	62	8	4	24	1.42
297625--297908	129	2.2	128	81	6	324	56	6	12	24	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298971--299036	22	3.0	22	77	16	75	51	1	10	36	1.46
298949--299053	43	2.5	43	79	4	106	52	6	11	29	1.63
300253--300286	17	2.0	17	100	0	68	41	0	11	47	1.40
300865--301021	41	3.9	41	85	8	216	29	12	21	36	1.90
300823--301000	41	4.6	38	78	14	168	29	12	23	34	1.91
300770--301003	78	3.0	77	79	8	242	31	10	21	36	1.88
302121--302151	2	15.5	2	93	0	53	51	0	0	48	1.00
308453--308837	54	7.1	54	90	0	590	34	12	15	36	1.86
314861--315060	94	2.1	94	85	2	267	40	11	24	24	1.88
314934--314992	20	2.8	22	80	12	70	40	13	23	22	1.89
315402--315780	161	2.3	162	92	1	618	32	14	16	35	1.90
315402--315783	54	7.1	54	93	0	622	32	14	17	35	1.90
323688--323712	12	2.1	12	100	0	50	8	0	40	52	1.31

Tables:   1   2

The End!