genome.fa.s1740.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001740.1 Hibiscus syriacus cultivar Beakdansim tig00003523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62261

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4107--4145	19	2.1	19	86	13	55	58	5	5	30	1.41
4644--4695	24	2.2	23	86	3	68	38	21	17	23	1.93
4655--4701	24	2.0	24	82	0	58	40	21	14	23	1.90
5442--5523	29	2.8	29	94	0	137	45	23	6	25	1.76
11476--11556	14	5.7	15	73	17	75	28	23	18	29	1.98
24708--24765	29	2.0	29	96	0	107	62	15	5	17	1.50
26315--26403	32	2.8	32	82	1	90	31	13	44	10	1.77
29646--29676	2	16.0	2	93	6	55	48	0	0	51	1.00
52343--52383	2	20.5	2	100	0	82	48	0	0	51	1.00
52565--52610	23	2.0	23	91	8	76	30	0	2	67	1.03
56203--56260	22	2.8	19	75	14	53	27	29	12	31	1.92
56289--56480	20	9.4	20	75	8	138	29	24	11	33	1.91
56215--56358	38	3.6	40	70	19	104	27	27	12	31	1.93
56179--56380	41	5.0	40	71	16	123	29	27	13	30	1.94
56180--56479	20	14.9	21	71	14	116	29	25	12	32	1.93
56266--56479	40	5.4	40	73	12	129	28	25	12	33	1.92
56323--56510	60	3.2	59	75	9	170	29	23	11	35	1.90
57284--57317	12	2.8	12	90	0	50	55	29	0	14	1.40
57443--57496	24	2.2	24	86	0	72	24	16	18	40	1.90
59761--59801	18	2.3	18	91	0	64	53	24	2	19	1.57
60158--60193	16	2.2	16	90	0	54	66	13	0	19	1.24
61573--61647	21	3.6	21	80	1	89	22	17	36	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61792--61845	4	13.5	4	84	0	72	68	3	1	25	1.16

Tables:   1

The End!