genome.fa.s1743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001743.1 Hibiscus syriacus cultivar Beakdansim tig00003530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110181

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322--402	23	3.7	23	87	9	89	29	8	17	44	1.78
342--404	20	3.0	20	93	6	99	33	6	19	41	1.76
1380--1427	17	2.8	17	87	0	69	35	14	6	43	1.71
2840--2872	14	2.4	14	95	5	59	84	6	0	9	0.76
2840--2878	13	3.1	13	89	10	55	82	5	0	12	0.83
29766--29821	21	2.7	21	80	5	60	30	16	1	51	1.54
29783--29826	21	2.1	21	83	8	54	34	18	0	47	1.49
29980--30025	22	2.1	22	100	0	92	26	15	26	32	1.95
30060--30513	149	3.0	149	91	1	730	36	20	15	27	1.93
31862--32022	64	2.5	62	84	8	189	26	21	18	34	1.96
34865--34920	21	2.7	21	80	5	60	30	14	3	51	1.59
34882--34925	21	2.1	21	83	8	54	34	18	0	47	1.49
35137--35590	151	3.0	149	93	0	739	36	21	14	26	1.93
36939--37099	64	2.5	63	84	8	191	26	21	17	34	1.95
40542--40614	29	2.5	30	82	4	78	42	0	1	56	1.08
41380--41422	20	2.2	20	83	8	52	30	6	6	55	1.53
42254--42318	18	3.6	18	76	17	62	32	0	4	63	1.15
49785--49809	8	3.1	8	100	0	50	36	12	24	28	1.91
51213--51239	14	1.9	14	100	0	54	55	7	22	14	1.64
51487--51528	20	2.1	20	90	0	66	35	21	11	30	1.90
52744--52770	14	1.9	14	100	0	54	55	7	22	14	1.64
53018--53076	20	3.0	19	80	11	66	40	20	6	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57387--57428	21	1.9	23	85	9	61	28	11	14	45	1.80
60388--60484	37	2.6	37	82	6	108	45	16	15	22	1.85
60434--60505	36	2.0	36	89	5	110	43	19	16	20	1.89
60541--60983	55	8.0	55	82	5	482	30	18	21	29	1.97
60551--60982	166	2.6	167	82	5	484	30	18	22	28	1.97
60546--60983	111	4.0	108	79	7	418	30	18	21	29	1.97
60981--61281	82	3.7	82	82	1	347	36	21	17	23	1.94
60981--61281	164	1.8	162	86	1	431	36	21	17	23	1.94
62961--62995	18	2.0	18	88	5	54	37	0	14	48	1.44
66514--66609	39	2.5	39	92	0	156	45	11	7	35	1.68
67202--67254	2	26.5	2	100	0	106	49	0	0	50	1.00
68550--68613	16	3.8	17	82	15	64	40	1	0	57	1.08
68553--68613	33	1.9	33	87	9	92	40	1	0	57	1.08
68550--68615	18	3.8	18	78	15	77	40	1	0	57	1.08
69373--69438	22	3.0	22	79	0	78	22	21	37	18	1.94
69951--70002	26	2.0	27	84	3	70	28	1	3	65	1.21
77092--77198	42	2.6	42	84	1	135	23	22	22	31	1.98
76758--77220	249	1.9	249	90	0	739	30	17	18	33	1.94
77383--77452	13	5.5	13	74	14	65	42	1	0	55	1.08
77382--77455	19	4.1	17	75	21	55	41	1	0	56	1.07
77386--77434	16	3.2	15	80	13	55	40	2	0	57	1.10
78105--78166	22	2.8	22	87	0	88	25	17	37	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78220--78285	30	2.2	30	94	0	114	25	12	34	27	1.91
78785--78832	13	3.5	13	78	10	60	27	4	0	68	1.07
78798--78846	15	3.4	15	77	11	66	26	2	0	71	0.97
78782--78846	28	2.3	28	100	0	130	26	3	0	70	1.01
78773--78846	28	2.3	33	71	26	86	25	2	1	70	1.09
81333--81403	28	2.5	29	75	16	78	67	2	0	29	1.05
81332--81400	23	3.1	22	73	18	63	68	2	0	28	1.04
81341--81399	23	2.6	23	79	15	68	69	3	0	27	1.04
83375--83413	12	3.2	12	89	10	53	58	0	0	41	0.98
86627--86667	14	2.9	14	88	3	55	73	2	0	24	0.96
86625--86667	23	1.9	22	85	4	59	74	2	0	23	0.93
86889--86933	20	2.2	20	92	0	72	24	15	13	46	1.82
86909--87528	244	2.5	244	87	2	843	33	14	15	35	1.89
87254--87334	41	1.9	43	82	5	103	25	17	25	30	1.97
95370--95627	131	2.0	131	91	1	419	39	15	10	34	1.82
103565--104070	81	6.2	81	88	1	728	27	21	13	36	1.92

Tables:   1

The End!