genome.fa.s1771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001771.1 Hibiscus syriacus cultivar Beakdansim tig00003572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74776

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572--830	92	2.7	93	83	8	276	32	15	16	35	1.90
3369--3431	10	6.7	9	77	13	56	66	0	12	20	1.24
3479--3584	23	4.6	21	75	18	77	71	1	5	20	1.16
3337--3615	9	31.2	9	67	19	86	70	1	7	21	1.19
3590--3640	5	10.2	5	80	16	61	58	0	0	41	0.98
3570--3641	12	5.5	13	73	15	51	61	0	1	37	1.05
3588--3640	7	7.1	7	76	19	54	58	0	0	41	0.98
3655--3707	9	5.3	11	72	19	53	69	0	1	28	0.99
3655--3707	20	2.7	20	94	2	90	69	0	1	28	0.99
3726--3767	20	2.2	20	82	4	50	80	0	4	14	0.86
3724--3790	34	1.9	34	82	8	82	74	0	5	19	1.02
3726--3775	22	2.4	20	78	18	57	80	0	4	16	0.87
4527--4617	33	2.7	33	87	1	119	29	12	13	45	1.79
4633--4657	13	1.9	13	100	0	50	24	8	16	52	1.70
4643--4693	23	2.2	23	86	6	68	25	5	11	56	1.57
5433--5550	33	3.6	31	75	17	82	17	5	16	60	1.54
5433--5556	16	7.7	16	73	13	76	17	4	16	61	1.51
6252--6305	26	2.1	26	92	0	90	29	22	3	44	1.70
9764--9846	8	10.5	8	71	20	59	34	2	1	61	1.17
18211--18257	20	2.3	20	85	7	60	36	14	25	23	1.93
26229--26385	21	7.8	20	72	7	84	38	24	17	19	1.92
26352--26544	20	9.6	20	83	4	228	35	25	20	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27040--27096	20	2.8	20	89	0	87	42	17	28	12	1.85
27080--27136	14	3.7	14	75	20	60	43	22	24	8	1.81
27062--27152	33	2.7	33	93	1	146	45	23	23	8	1.80
27148--27245	19	5.7	19	70	22	90	10	23	22	43	1.83
27170--27259	14	5.7	14	72	23	72	8	24	23	43	1.82
27153--27267	33	3.5	33	97	0	221	9	23	20	46	1.80
28960--29519	93	6.1	93	98	1	1081	21	12	19	46	1.83
28960--29519	277	2.0	277	98	1	1077	21	12	19	46	1.83
29584--29676	33	2.8	32	91	4	150	46	27	18	7	1.76
29567--29676	19	6.3	19	71	20	87	45	28	17	9	1.78
29672--29790	19	6.8	18	74	19	110	8	19	25	47	1.77
29694--29750	14	3.7	14	72	20	51	7	19	28	45	1.76
29677--29769	33	2.8	33	91	0	159	8	19	24	47	1.77
29672--29806	19	7.6	19	73	20	105	9	18	25	45	1.80
31728--31763	14	2.6	14	95	0	63	33	0	22	44	1.53
31867--31964	19	5.4	19	84	13	143	45	17	22	14	1.84
31867--31983	53	2.2	53	98	1	227	44	17	23	13	1.85
31973--32193	19	12.7	19	76	19	241	14	20	18	46	1.84
31979--32165	52	3.6	52	96	1	331	14	21	17	47	1.83
31996--32207	33	6.2	33	76	14	207	13	20	18	47	1.82
34499--34523	12	2.1	12	100	0	50	0	28	0	72	0.86
34697--34743	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35450--35694	20	12.2	20	87	1	240	20	19	23	36	1.95
35681--35763	21	4.0	21	73	6	78	25	16	24	33	1.96
35661--35759	42	2.4	43	77	11	100	21	18	23	37	1.94
36971--37027	22	2.6	22	97	0	105	28	15	24	31	1.96
37394--37605	68	3.1	68	88	0	298	29	16	24	29	1.97
37627--37728	46	2.2	47	83	10	122	46	6	17	29	1.74
40811--40917	53	2.0	53	100	0	214	29	11	18	40	1.86
52131--52263	63	2.0	66	81	11	159	36	20	18	25	1.95
52839--52892	23	2.3	23	87	0	72	22	27	22	27	1.99
59028--59160	63	2.0	66	81	11	159	36	20	18	25	1.95
59729--59796	23	3.0	22	87	8	91	22	25	26	26	2.00
64148--64174	14	1.9	14	100	0	54	37	3	0	59	1.15
65100--65171	24	3.2	23	78	18	71	29	0	1	69	0.97
65107--65166	29	2.0	31	81	12	72	33	0	1	65	1.03
65124--65165	16	2.5	17	84	7	59	33	0	0	66	0.92
67504--67584	35	2.3	32	77	20	83	25	8	9	55	1.61
71000--71040	16	2.6	16	88	7	57	68	2	4	24	1.22
72354--72389	17	2.1	17	100	0	72	27	22	11	38	1.88

Tables:   1

The End!