Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001790.1 Hibiscus syriacus cultivar Beakdansim tig00003612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92352

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
213--550
174
2.0
169
90
6
546
36
15
15
32
1.89
4034--4368
171
1.9
173
90
2
541
44
9
3
42
1.54
4354--4394
20
2.0
22
85
9
59
36
4
2
56
1.34
4756--4907
60
2.5
60
83
6
166
40
3
23
32
1.73
5189--5228
18
2.3
18
87
12
57
40
7
12
40
1.71
21307--21504
84
2.4
84
99
0
387
21
17
26
34
1.95
21307--21504
41
4.7
43
85
7
298
21
17
26
34
1.95
21327--21546
63
3.5
61
74
15
191
20
18
25
36
1.94
22110--22154
6
7.5
6
100
0
90
0
15
51
33
1.44
22314--22378
20
3.2
20
72
10
69
33
26
20
20
1.96
29048--29191
29
5.0
29
96
2
263
15
38
27
18
1.91
29414--29484
29
2.4
29
97
0
133
21
25
33
19
1.97
29478--29502
12
2.1
12
100
0
50
16
0
60
24
1.36
29542--29609
35
1.9
35
93
0
118
27
30
16
25
1.96
30046--30089
21
2.1
21
86
0
61
29
0
18
52
1.46
30599--30642
23
1.9
23
85
0
61
40
0
9
50
1.34
30872--30936
26
2.6
25
79
13
62
50
6
1
41
1.36
33832--34183
26
14.2
26
73
13
240
42
2
9
45
1.50
33774--34167
124
3.2
124
93
3
663
42
2
9
45
1.49
34142--34183
14
3.1
14
86
3
59
45
2
4
47
1.36
34136--34209
38
1.9
38
83
5
96
45
4
5
44
1.45
34391--34423
17
1.9
17
93
0
57
36
6
12
45
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36658--36739
34
2.5
34
84
9
100
48
12
0
39
1.41
36799--36911
42
2.6
43
77
12
124
47
11
0
40
1.40
36780--36870
46
2.0
47
85
10
125
47
10
0
41
1.39
36780--36883
46
2.2
47
83
11
124
48
11
0
40
1.40
36851--36939
41
2.2
40
78
8
90
46
10
1
42
1.45
36975--37013
16
2.3
18
86
8
55
56
5
0
38
1.22
37019--37069
16
3.2
16
78
10
61
1
37
0
60
1.08
37244--37341
50
2.0
49
95
2
178
23
18
38
19
1.93
37376--37442
30
2.3
30
94
2
118
20
31
34
13
1.92
37429--37507
32
2.5
32
95
0
149
10
34
27
27
1.89
37601--37660
29
2.1
29
96
0
111
18
28
28
25
1.98
37828--37917
44
2.0
44
97
0
171
27
31
2
38
1.69
39118--39161
3
14.7
3
100
0
88
65
0
0
34
0.93
39702--39777
38
2.0
38
100
0
152
47
10
21
21
1.80
42919--42943
2
12.5
2
100
0
50
52
48
0
0
1.00
45311--45347
12
3.1
12
88
0
56
29
2
0
67
1.04
46863--46908
18
2.6
18
89
0
65
21
23
15
39
1.92
50012--50046
2
17.5
2
100
0
70
51
0
48
0
1.00
51979--52009
6
5.0
6
92
7
53
32
0
0
67
0.91
52575--52650
38
2.0
38
97
0
143
48
9
21
21
1.77
78405--78464
30
2.0
30
100
0
120
50
13
6
30
1.67
80852--80924
35
2.1
35
100
0
146
43
28
5
21
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82008--82119
56
2.0
56
100
0
224
33
21
17
26
1.96
83479--83625
49
3.0
49
89
0
222
36
11
19
31
1.88

Tables:   1

The End!