genome.fa.s1796.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001796.1 Hibiscus syriacus cultivar Beakdansim tig00003631_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110843

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5554--5643	35	2.8	31	72	18	101	36	23	14	25	1.93
7426--7528	53	1.9	53	100	0	206	53	13	17	15	1.73
9136--9203	33	2.1	33	100	0	136	35	23	30	10	1.88
20009--20035	14	1.9	14	100	0	54	44	0	18	37	1.50
22673--22699	2	13.5	2	100	0	54	51	0	0	48	1.00
30354--30394	21	2.0	21	100	0	82	68	7	9	14	1.39
32012--32102	47	1.9	47	95	0	164	58	7	8	25	1.55
33408--33657	134	1.9	135	89	3	396	30	12	18	39	1.88
37283--37337	24	2.3	24	96	0	101	27	7	27	38	1.83
40158--40199	18	2.3	18	84	8	59	0	28	57	14	1.38
44935--44979	21	2.1	21	84	8	56	35	8	2	53	1.45
47073--47117	22	2.1	21	84	12	56	53	0	4	42	1.21
46959--47332	138	2.7	139	92	3	619	48	8	7	36	1.62
47475--47524	20	2.6	18	81	12	55	68	4	2	26	1.18
47475--47553	18	4.2	17	74	17	59	63	2	5	29	1.29
48919--48969	3	18.0	3	78	11	54	64	1	1	31	1.15
50201--50240	21	1.9	21	89	0	62	50	20	0	30	1.49
54457--54535	38	2.1	38	92	0	131	53	10	21	15	1.71
61763--61810	22	2.2	21	85	7	60	50	6	14	29	1.67
79789--79921	6	22.2	6	100	0	266	33	49	16	0	1.46
81861--81898	19	2.0	19	89	0	58	60	0	15	23	1.35
90920--91037	59	1.9	61	84	6	159	39	16	14	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92992--93030	15	2.6	15	95	0	69	53	7	23	15	1.67
96327--96374	15	3.2	15	83	13	55	20	0	4	75	0.97
101390--101728	174	1.9	177	90	4	542	28	20	18	32	1.96

Tables:   1

The End!