genome.fa.s1829.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001829.1 Hibiscus syriacus cultivar Beakdansim tig00003697_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68596

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544--1635	45	2.0	45	100	0	184	39	19	13	28	1.89
3057--3108	20	2.6	20	96	0	95	30	32	15	21	1.94
3119--3279	65	2.5	64	87	1	232	31	21	16	31	1.95
11186--11217	2	16.0	2	100	0	64	50	0	0	50	1.00
12926--12973	21	2.3	21	92	0	78	45	20	14	18	1.85
13130--13164	12	2.9	12	100	0	70	17	22	17	42	1.88
13130--13165	6	6.0	6	86	0	54	16	22	16	44	1.86
16512--16545	18	1.9	17	88	5	50	29	0	5	64	1.17
19146--19225	30	2.7	30	90	1	117	33	41	0	25	1.56
19986--20212	107	2.1	108	96	0	420	21	10	11	57	1.63
19986--20252	107	2.5	107	87	3	288	20	10	10	58	1.61
20286--20340	6	9.2	6	75	13	51	21	0	3	74	0.97
26306--26385	36	2.2	36	84	0	97	31	21	13	33	1.92
26417--26497	39	2.0	41	81	13	98	28	17	18	35	1.93
26550--26605	24	2.3	24	96	0	103	33	16	7	42	1.75
26619--27126	36	14.0	39	82	10	270	25	18	16	39	1.91
26721--26780	30	2.0	30	96	0	111	26	25	15	33	1.95
26777--26918	15	8.1	16	65	25	56	24	18	15	41	1.89
26792--26929	21	7.4	19	64	25	64	23	18	15	42	1.89
26775--27126	36	9.8	36	89	0	515	23	17	16	42	1.89
26775--27126	145	2.4	144	91	1	571	23	17	16	42	1.89
26781--27126	181	1.9	180	90	0	557	23	17	17	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27570--28174	129	4.7	129	84	4	675	29	19	20	30	1.97
28481--28544	30	2.2	30	88	2	94	32	43	0	23	1.54
29251--29485	110	2.1	110	94	2	411	21	11	10	57	1.63
34353--34459	42	2.6	41	80	1	115	25	23	21	29	1.99
34575--34694	42	2.9	42	87	7	172	24	21	20	34	1.97
37029--37066	2	19.0	2	100	0	76	50	0	0	50	1.00
37112--37138	2	13.5	2	100	0	54	48	0	0	51	1.00
37317--37474	21	7.8	20	70	7	77	37	24	17	19	1.93
37442--37752	20	15.5	20	81	6	79	34	26	19	20	1.96
37442--37831	40	9.7	40	87	2	439	35	25	18	20	1.95
37480--37831	20	17.6	19	85	5	398	34	25	18	21	1.96
38507--38553	24	2.0	24	87	8	69	25	14	21	38	1.92
38728--38752	12	2.1	12	100	0	50	72	0	28	0	0.86
41033--41306	19	15.4	19	81	15	354	46	17	21	13	1.83
41061--41328	109	2.5	105	91	6	459	46	16	22	14	1.83
41061--41328	52	5.0	52	93	4	455	46	16	22	14	1.83
41335--41417	20	4.6	19	81	15	113	14	24	18	43	1.87
41524--41560	14	2.6	14	91	0	65	45	21	0	32	1.52
43506--43562	14	3.7	14	77	20	60	45	22	21	10	1.82
43487--43579	33	2.8	33	95	0	168	47	21	20	10	1.80
43450--43584	19	7.6	19	76	16	128	45	23	19	11	1.82
43580--43708	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43580--43671	33	2.8	33	93	3	150	7	18	28	45	1.76
43752--44128	182	2.0	186	97	2	717	46	18	12	22	1.83
45831--45920	14	5.7	14	74	23	81	42	23	25	8	1.83
45823--45937	33	3.5	33	95	0	212	45	20	24	9	1.81
45830--45942	19	6.8	18	72	23	88	43	22	24	9	1.83
45954--46008	14	3.6	14	73	21	56	9	25	23	41	1.83
45938--46008	33	2.2	33	94	0	124	8	22	25	43	1.81
45949--46030	33	2.5	33	89	2	119	9	25	21	42	1.84
45961--46049	20	4.8	20	72	19	75	12	24	19	43	1.85
46129--46199	33	2.2	33	92	0	115	47	16	22	12	1.80
46380--46434	22	2.5	22	81	0	74	20	16	40	23	1.91
46580--46772	20	9.6	20	82	5	219	19	19	25	35	1.95
46580--46772	60	3.2	60	83	0	251	19	19	25	35	1.95
47049--47088	2	20.0	2	100	0	80	50	0	0	50	1.00
48994--49042	17	2.9	17	96	0	89	42	2	4	51	1.32
49118--49180	26	2.4	27	81	2	83	38	6	14	41	1.71
49110--49341	94	2.4	96	89	2	362	36	8	16	39	1.78
49247--49407	66	2.4	66	85	7	200	39	6	13	40	1.70
49153--49618	162	2.8	162	83	6	557	38	7	14	39	1.74
49539--49703	82	2.1	79	91	3	267	40	8	14	36	1.77
49636--49769	65	2.0	65	84	1	169	34	9	17	38	1.82
49886--50056	81	2.1	80	89	4	256	41	8	14	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55317--55414	26	3.8	26	73	18	80	57	0	4	38	1.18
55353--55392	18	2.3	17	87	12	55	67	0	2	30	1.04
59329--59372	15	2.6	17	79	17	56	29	36	20	13	1.91
59341--59374	15	2.3	15	100	0	68	35	32	17	14	1.91
59489--59536	23	2.0	26	88	12	75	29	20	6	43	1.76
59519--59554	12	3.0	12	91	0	63	36	25	5	33	1.79
65256--65324	24	2.8	26	83	12	85	31	24	5	37	1.79
65289--65324	12	3.0	12	91	0	63	36	25	5	33	1.79

Tables:   1

The End!