Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001833.1 Hibiscus syriacus cultivar Beakdansim tig00003706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94825

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2714--2812
27
3.7
27
94
2
157
25
28
23
23
2.00
2879--2942
19
3.5
18
75
22
62
14
32
26
26
1.94
18185--18228
16
2.8
16
82
3
54
81
4
2
11
0.92
18257--18334
21
3.6
21
68
25
54
75
3
5
15
1.12
18297--18343
15
3.1
15
87
9
60
76
2
2
19
0.99
18383--18415
12
2.8
12
90
4
50
87
12
0
0
0.53
18379--18415
17
2.2
17
95
0
65
86
13
0
0
0.57
18518--18610
2
48.5
2
78
12
97
55
0
1
43
1.06
18563--18723
13
12.5
13
68
20
88
70
1
3
24
1.12
18530--18694
54
3.1
52
75
13
133
64
1
2
31
1.14
18603--18698
28
3.5
26
72
9
66
70
3
3
22
1.15
18635--18711
24
3.3
24
75
10
70
70
1
5
23
1.15
19782--19809
2
14.0
2
100
0
56
50
0
0
50
1.00
20757--21388
85
7.5
85
84
2
718
26
18
21
34
1.96
25305--25390
14
6.4
14
71
15
65
76
9
2
11
1.10
25327--25420
9
10.1
9
71
11
55
77
8
4
9
1.10
25597--25720
2
64.5
2
85
7
159
54
0
0
44
1.05
25733--25766
16
2.1
17
88
5
52
82
2
0
14
0.79
25808--25857
19
2.6
19
81
12
75
78
0
8
14
0.97
31610--31647
19
2.0
19
85
10
51
36
10
2
50
1.51
33890--34015
47
2.8
45
83
8
148
40
8
22
28
1.83
36820--36868
15
3.3
15
86
8
73
75
0
20
4
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36819--36861
13
3.2
13
90
9
68
76
0
20
2
0.89
36819--36910
15
5.7
16
76
17
59
75
1
19
4
1.04
36819--36876
30
1.9
30
86
13
84
75
0
18
5
0.98
36822--36907
6
14.3
6
72
11
52
74
1
19
4
1.06
41052--41177
47
2.8
45
85
5
164
39
7
23
29
1.83
42415--42460
24
1.9
24
95
0
83
21
32
23
21
1.98
42410--42482
22
3.2
22
83
7
83
21
35
23
19
1.96
42785--42832
18
2.6
19
83
6
55
45
22
29
2
1.64
42800--42845
18
2.5
18
89
3
65
45
23
30
0
1.53
44843--44871
2
14.5
2
100
0
58
51
0
0
48
1.00
44865--44917
26
2.0
26
85
7
72
67
1
5
24
1.22
46023--46070
2
24.0
2
100
0
96
50
0
0
50
1.00
47382--47452
25
2.9
24
75
10
72
29
2
2
64
1.22
47490--47593
50
2.1
50
87
3
147
41
18
7
32
1.79
47497--47604
50
2.2
51
83
3
139
40
19
7
32
1.79
57119--57399
143
2.0
143
90
2
447
32
7
17
42
1.77
64444--64741
149
2.0
149
93
1
508
36
19
15
28
1.92
65227--65376
67
2.2
67
92
2
248
16
26
27
30
1.97
71415--71459
23
2.0
23
86
8
65
28
28
22
20
1.98
71438--71741
149
2.0
149
92
1
520
37
19
15
27
1.92
72220--72369
67
2.2
67
92
2
248
16
26
27
30
1.97
77213--77323
2
57.0
2
81
12
133
45
0
1
51
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77220--77395
20
8.9
18
78
13
118
46
1
3
49
1.26
77364--77417
21
2.5
22
79
11
58
44
3
1
50
1.30
77407--77459
17
2.9
17
83
8
52
43
1
3
50
1.30
77417--77568
49
3.1
49
77
13
150
44
1
6
46
1.40
77514--77567
22
2.6
21
82
11
67
48
0
9
42
1.35
77771--77810
2
19.0
2
85
10
53
50
2
2
45
1.28
77753--77802
20
2.6
19
84
6
64
48
6
6
40
1.52
78513--78815
149
2.0
149
99
0
597
35
20
16
28
1.94
81249--81346
43
2.2
47
83
8
125
42
5
6
45
1.51
81256--81349
24
4.3
22
79
11
97
43
5
5
45
1.49
81491--81604
43
3.0
36
72
19
97
45
5
4
44
1.46
81600--81655
29
2.0
29
86
6
80
42
0
3
53
1.18
81580--81721
72
2.0
71
82
8
171
46
1
3
48
1.28
81672--81744
6
12.3
6
73
23
50
47
0
1
50
1.09
81635--81769
28
5.0
27
74
19
104
48
0
2
48
1.19
82289--82352
3
21.3
3
78
15
62
29
3
0
67
1.06
84168--84223
29
1.9
29
85
7
78
30
7
17
44
1.76
86405--86496
18
5.1
17
75
17
78
59
2
3
34
1.25
86599--86633
18
2.1
18
89
10
56
31
20
11
37
1.88
86644--86682
16
2.4
16
91
0
60
33
17
28
20
1.96
86776--86818
22
2.0
22
81
9
52
11
20
39
27
1.88
87912--87946
16
2.3
15
90
5
52
60
2
5
31
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93075--93162
40
2.2
40
93
2
151
36
9
23
30
1.86
93625--93657
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!