genome.fa.s1835.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001835.1 Hibiscus syriacus cultivar Beakdansim tig00003714_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189360

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324--466	76	1.9	73	88	9	218	34	9	2	54	1.44
1045--1203	85	1.9	85	95	0	291	42	10	13	33	1.78
1205--1903	197	3.6	196	83	7	835	31	16	14	38	1.89
4592--4639	19	2.5	19	96	0	87	52	10	6	31	1.60
6074--6781	389	1.8	389	86	4	1034	32	15	13	38	1.87
6074--6784	195	3.7	195	81	7	831	32	15	14	38	1.87
8320--8374	24	2.3	24	81	9	69	49	12	5	32	1.64
13225--13278	23	2.3	23	83	0	63	27	18	33	20	1.96
17129--17350	117	1.9	117	83	5	288	28	14	9	48	1.74
19568--19617	15	3.1	15	83	13	64	24	6	40	30	1.79
19924--22004	199	10.4	199	91	0	3219	32	14	14	38	1.87
23871--23899	14	2.0	15	93	6	51	10	41	0	48	1.37
26426--26902	180	2.6	180	87	2	652	27	15	13	43	1.84
33805--33862	13	4.3	13	74	12	55	32	3	1	62	1.22
33798--33863	13	5.2	12	74	16	53	31	3	1	63	1.19
36110--36145	2	18.0	2	94	0	63	52	0	0	47	1.00
43578--43606	14	2.0	15	93	6	51	48	3	6	41	1.47
45240--45291	28	2.0	25	81	11	59	53	0	3	42	1.19
45250--45304	23	2.3	26	81	12	73	54	0	3	41	1.18
45354--45398	22	2.0	22	86	8	63	57	0	0	42	0.98
46538--46579	23	1.9	21	85	9	57	2	19	23	54	1.55
46984--47038	3	18.7	3	81	10	69	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46972--47042	21	3.5	21	71	21	62	59	0	0	40	0.98
47168--47451	124	2.3	120	85	5	349	24	18	14	42	1.88
47398--47559	36	4.5	36	97	0	306	20	22	9	47	1.79
47614--47702	17	5.1	17	68	24	60	20	20	10	49	1.77
47614--47705	36	2.6	36	91	5	152	19	20	9	50	1.76
47469--48100	143	4.4	143	94	2	1061	26	18	13	41	1.87
47684--47920	73	3.3	72	65	17	193	28	16	13	40	1.87
47757--47848	36	2.6	36	87	5	143	18	20	9	51	1.74
47900--47988	17	5.1	17	68	24	60	20	20	10	49	1.77
47900--47988	36	2.5	36	94	3	155	20	20	10	49	1.77
47932--48439	113	4.5	113	95	1	864	28	20	13	37	1.91
49167--49480	115	2.7	114	94	1	540	30	20	14	34	1.92
49385--49674	93	3.1	93	90	0	438	35	19	14	30	1.92
50670--50734	7	9.9	7	77	12	66	0	16	0	83	0.66
50669--50734	17	3.8	17	84	4	78	0	18	0	81	0.68
50671--50734	8	7.3	9	75	16	55	0	15	0	84	0.63
50678--50736	13	4.7	12	82	16	66	0	16	0	83	0.66
50673--50733	25	2.4	24	86	10	86	0	16	0	83	0.64
61937--61988	28	2.0	25	81	11	59	53	0	3	42	1.19
61947--62001	23	2.3	26	81	12	73	54	0	3	41	1.18
62051--62095	22	2.0	22	86	8	63	57	0	0	42	0.98
63675--63732	3	19.7	3	86	10	84	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63662--63733	9	7.9	10	84	7	68	61	0	0	38	0.96
69267--69321	22	2.5	22	77	19	53	20	0	32	47	1.50
71194--71337	21	7.0	21	69	13	93	34	22	20	22	1.97
71197--71331	42	3.3	42	91	2	220	35	22	20	21	1.96
71346--71391	21	2.2	21	88	0	65	23	23	21	30	1.99
80477--80524	25	2.0	25	91	4	80	27	25	33	14	1.94
82503--82547	23	2.0	23	86	0	63	26	26	26	20	1.99
88639--88745	18	5.9	18	91	0	160	29	30	19	19	1.97
89378--89425	19	2.5	19	96	0	87	20	29	16	33	1.95
90018--90056	2	19.5	2	100	0	78	51	0	0	48	1.00
92351--92417	23	2.9	23	86	0	98	29	25	26	17	1.98
98652--98688	18	2.1	18	94	0	65	32	32	13	21	1.92
98654--98692	18	2.2	18	90	0	60	33	35	10	20	1.86
99946--100021	2	38.0	2	100	0	152	50	0	0	50	1.00
100218--100361	53	2.7	53	93	1	236	48	8	9	33	1.66
101858--101906	18	2.7	18	96	0	89	22	26	38	12	1.89
105247--105307	3	20.7	3	83	3	79	34	3	1	60	1.23
106669--106732	30	2.1	30	85	0	83	14	6	10	68	1.37
109439--109664	103	2.2	103	91	1	364	26	12	23	37	1.91
109672--109735	23	2.8	23	92	0	101	18	25	26	29	1.98
114162--114190	2	14.5	2	100	0	58	51	0	0	48	1.00
115517--115686	60	2.7	64	83	6	222	37	21	14	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116118--116224	40	2.7	40	88	2	153	24	32	15	27	1.96
116415--116514	3	33.7	3	95	2	184	33	0	1	66	0.99
117856--117919	30	2.1	30	82	0	74	15	9	10	64	1.50
123715--123757	20	2.2	20	84	8	54	48	9	20	20	1.77
124096--124164	36	1.9	36	93	0	120	50	13	7	28	1.67
124565--124886	166	1.9	166	96	2	594	43	15	5	35	1.71
125127--125173	19	2.5	19	96	0	76	25	2	55	17	1.53
132673--132706	16	2.1	16	100	0	68	61	14	11	11	1.56
137908--137932	11	2.3	11	100	0	50	32	40	0	28	1.57
140700--140745	20	2.3	20	78	14	58	23	0	19	56	1.42
142985--143093	45	2.3	47	84	7	152	38	20	12	28	1.89
144942--145161	115	1.9	115	87	0	323	37	9	10	43	1.70
149754--149781	2	14.0	2	100	0	56	50	0	0	50	1.00
159017--159182	54	3.1	54	92	1	262	36	15	24	23	1.94
159542--159618	22	3.5	22	87	0	109	35	14	12	37	1.84
160057--160713	113	5.6	114	89	5	776	38	14	19	26	1.91
160057--160801	226	3.2	229	83	7	799	39	14	19	26	1.90
160378--160801	123	3.4	124	88	2	595	39	14	19	25	1.90
162542--162759	115	1.9	113	86	1	310	37	9	10	43	1.71
162554--162791	115	2.1	111	82	6	269	37	8	8	44	1.67
168185--168238	24	2.2	24	96	0	99	59	3	7	29	1.42
170302--170419	40	3.0	40	87	0	155	20	21	39	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170173--170535	174	2.1	174	84	2	478	23	19	33	24	1.97
170570--170666	28	3.4	28	76	15	90	43	15	16	24	1.87
170642--170791	63	2.3	66	80	10	173	38	12	22	26	1.90
170786--170855	32	2.2	33	89	2	106	37	11	14	37	1.82
171220--171442	65	3.4	64	75	8	180	41	12	16	29	1.85
173322--173367	18	2.5	18	86	10	58	0	13	10	76	1.03
173322--173381	15	3.5	17	80	8	61	0	13	10	76	1.01
173336--173369	11	3.2	11	91	4	52	0	8	8	82	0.85
174666--174696	13	2.3	14	94	5	55	61	9	6	22	1.50
176904--177030	60	2.1	60	83	2	157	48	2	14	33	1.57
178602--178674	36	2.0	36	84	10	96	47	4	1	46	1.30
179749--179864	62	1.9	61	82	8	148	31	20	6	42	1.76
179749--179864	60	1.9	60	82	8	146	31	20	6	42	1.76
179987--180134	59	2.5	59	80	3	163	44	2	18	34	1.64
180722--180771	22	2.3	23	86	6	68	22	0	2	76	0.89
181008--181213	73	2.8	75	78	6	231	39	9	7	44	1.64

Tables:   1

The End!