Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001862.1 Hibiscus syriacus cultivar Beakdansim tig00003766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67457

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5955--6180
110
2.0
111
93
4
386
42
17
10
30
1.82
6888--6921
16
2.2
15
89
5
50
61
0
2
35
1.11
10909--10954
24
2.0
23
82
4
56
36
2
15
45
1.58
11252--11328
39
2.0
39
89
0
118
38
12
25
22
1.90
15815--15858
21
2.1
21
86
0
61
45
0
2
52
1.13
17797--17826
16
1.9
16
93
6
53
53
0
0
46
1.00
18673--18703
3
10.3
3
100
0
62
32
0
0
67
0.91
19455--19487
2
17.0
2
93
6
59
48
0
0
51
1.00
21302--21365
28
2.2
29
88
2
94
39
6
1
53
1.36
21829--21857
15
1.9
15
100
0
58
48
27
6
17
1.72
28646--28710
34
1.9
34
93
0
112
44
9
15
30
1.78
32593--33611
4
257.2
4
96
1
1770
49
25
0
23
1.56
32835--32869
2
17.5
2
93
0
61
51
45
0
2
1.16
33606--33669
19
3.3
19
73
4
74
39
21
14
25
1.91
33590--33681
39
2.7
31
72
23
85
39
21
11
27
1.89
33602--33678
39
2.0
39
100
0
154
38
20
11
28
1.88
37462--37529
30
2.3
30
79
5
75
33
2
0
63
1.10
37464--37513
22
2.2
24
76
20
63
34
2
0
64
1.05
38328--38354
12
2.2
12
100
0
54
7
7
25
59
1.51
54274--54301
14
2.0
14
100
0
56
28
7
7
57
1.52
54929--55023
30
3.1
30
83
1
100
33
17
9
38
1.82
55134--55169
18
1.9
19
94
5
65
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57757--57786
2
15.0
2
100
0
60
50
0
0
50
1.00
66968--67021
25
2.2
25
100
0
108
7
16
55
20
1.65

Tables:   1

The End!