genome.fa.s1867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001867.1 Hibiscus syriacus cultivar Beakdansim tig00003782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73727

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492--746	120	2.1	123	84	6	331	33	14	26	25	1.94
1909--1985	36	2.1	36	82	0	100	40	22	15	22	1.91
2393--3626	54	22.9	54	80	10	701	32	16	25	25	1.96
2404--3022	106	5.9	105	85	6	670	32	18	26	22	1.97
2395--3022	314	2.0	315	84	6	826	32	18	26	22	1.97
2973--3619	55	11.8	55	82	6	601	31	15	25	27	1.96
2973--3619	219	2.9	222	80	9	720	31	15	25	27	1.96
3798--3856	19	3.4	17	84	13	59	38	0	0	61	0.96
3811--3858	3	16.3	3	87	12	73	37	0	0	62	0.95
3799--3854	25	2.4	24	85	11	80	37	0	0	62	0.95
4211--4595	146	2.6	146	90	0	592	32	21	25	20	1.98
4752--4789	16	2.4	16	100	0	76	26	15	10	47	1.78
6848--7234	209	1.8	212	88	5	604	50	8	11	29	1.68
7259--7367	2	54.0	2	74	12	89	47	2	4	44	1.37
7259--7393	29	4.8	29	67	22	83	48	2	5	43	1.40
7264--7393	42	3.2	40	77	16	119	47	3	5	43	1.41
7259--7353	11	9.3	10	73	10	59	49	3	4	43	1.38
7315--7375	22	2.6	24	77	15	65	44	1	6	47	1.39
7493--7567	9	8.6	9	69	19	52	44	0	5	50	1.24
7524--7567	13	3.3	13	78	6	52	43	0	6	50	1.29
7603--7669	23	3.1	20	78	16	62	40	5	1	52	1.35
7616--7682	22	2.9	24	85	10	79	38	5	4	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7643--7786	18	7.7	18	68	18	55	39	7	10	42	1.68
7605--7687	22	3.8	21	80	12	78	39	7	3	49	1.48
7696--7755	20	3.1	20	65	26	56	35	5	13	46	1.65
7679--7772	38	2.6	38	89	5	149	36	7	11	44	1.69
7757--7825	33	2.2	32	92	5	113	44	8	7	39	1.63
7799--7860	24	2.6	25	82	12	76	38	8	9	43	1.67
7837--7883	20	2.3	20	77	0	58	44	12	2	40	1.54
7878--7937	27	2.2	27	93	0	102	38	8	3	50	1.49
7873--7950	20	3.5	20	74	19	50	41	7	3	47	1.50
7775--7985	33	6.4	33	70	20	86	41	9	5	43	1.60
8010--8241	33	7.2	33	74	19	197	41	7	8	42	1.63
8037--8087	18	2.8	18	90	0	84	47	5	7	39	1.57
8037--8098	18	3.5	17	84	4	61	46	6	6	40	1.55
8010--8127	36	3.5	34	80	13	120	42	7	7	42	1.62
8134--8269	58	2.5	51	78	17	157	43	6	8	41	1.62
8170--8217	25	1.9	25	86	0	69	45	8	4	41	1.53
8057--8250	58	3.2	58	82	10	221	41	7	8	42	1.65
8230--8280	18	2.8	18	96	0	93	49	5	5	39	1.51
8449--8501	21	2.5	21	81	0	70	41	7	3	47	1.50
8491--8539	22	2.1	22	88	7	71	36	2	8	53	1.43
8513--8798	31	8.8	31	74	20	164	44	3	2	49	1.31
8537--8583	16	2.9	16	81	6	51	44	2	2	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8548--8604	21	2.5	22	83	11	71	43	3	1	50	1.29
8717--8794	6	13.3	6	74	23	53	47	0	1	51	1.09
8742--8819	28	3.0	27	85	9	108	48	0	0	51	1.00
8686--8819	21	6.1	22	73	19	102	48	1	0	49	1.15
10964--11018	23	2.4	23	84	0	65	21	9	27	41	1.83
11626--11664	14	2.7	14	88	11	53	56	5	2	35	1.35
11649--11693	19	2.4	19	85	3	56	62	0	6	31	1.21
12929--12967	19	2.1	19	85	9	53	23	25	7	43	1.80
14084--14122	20	2.0	20	90	10	62	12	10	5	71	1.28
14155--14202	22	2.2	21	82	14	53	10	16	10	62	1.53
17432--17476	21	2.1	21	100	0	90	51	4	13	31	1.61
21422--21488	25	2.7	25	82	17	86	50	0	7	41	1.30
21744--21819	39	1.9	39	87	10	111	52	0	13	34	1.40
22258--22330	31	2.4	31	78	0	74	49	15	6	28	1.70
22466--22497	13	2.5	13	100	0	64	37	25	18	18	1.94
23101--23164	33	1.9	33	100	0	128	37	15	28	18	1.92
25558--25654	48	2.0	48	90	4	151	14	12	31	41	1.83
25878--25924	16	3.0	16	81	3	60	14	8	27	48	1.73
26454--26526	20	3.7	20	88	0	110	27	26	20	26	1.99
26680--26713	12	2.9	12	86	4	52	17	41	5	35	1.74
27268--27321	24	2.2	24	86	0	72	24	16	18	40	1.90
29773--29841	20	3.5	20	95	0	120	36	26	21	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29773--29849	20	3.8	20	94	0	118	38	23	22	15	1.92
31938--32005	20	3.5	19	82	6	82	38	25	22	14	1.92
31994--32084	14	5.9	14	74	20	83	48	23	17	10	1.79
31978--32089	33	3.4	33	97	1	208	47	22	18	11	1.81
31978--32100	65	1.9	66	91	5	205	47	23	17	11	1.80
32096--32192	19	5.6	19	71	22	97	13	18	20	47	1.82
32118--32176	14	3.9	14	74	20	55	11	15	22	50	1.76
32101--32192	33	2.8	33	93	0	157	13	17	20	48	1.80
32177--32231	20	2.8	19	83	8	65	16	23	23	36	1.94
32713--32757	18	2.5	18	88	0	72	13	15	44	26	1.83
34077--34135	20	3.0	20	87	0	73	42	22	18	16	1.89
34398--34441	22	2.0	22	95	0	79	18	15	45	20	1.85
34621--34756	20	6.7	20	75	9	105	22	17	24	36	1.95
34642--34759	41	2.9	41	93	0	191	20	16	22	39	1.92
36148--36190	3	14.3	3	100	0	86	32	0	0	67	0.91
36708--36786	33	2.3	32	79	14	86	58	3	1	36	1.24
36744--36812	22	3.2	21	74	15	61	63	2	1	31	1.18
36859--36963	38	2.7	38	75	11	97	43	1	17	37	1.60
37355--37430	31	2.5	31	84	0	98	46	14	9	30	1.76
44062--44106	15	3.0	15	80	0	54	51	0	0	48	1.00
44069--44160	45	2.1	45	89	2	141	48	1	0	50	1.08
46842--46927	32	2.7	31	90	1	127	37	22	12	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47152--47309	75	2.1	75	95	3	284	51	6	6	35	1.53
48331--48391	25	2.3	27	80	13	81	16	16	18	49	1.80
48339--48397	25	2.4	25	94	0	100	13	18	16	50	1.77
56950--57004	16	3.4	16	84	2	74	23	21	12	41	1.88
57507--57540	17	2.0	17	88	0	50	44	2	2	50	1.32
57975--58052	7	11.3	7	77	2	59	20	0	29	50	1.49
58054--58117	2	33.0	2	85	6	87	43	0	0	56	0.99
58054--58117	29	2.2	29	91	0	101	43	0	0	56	0.99
58347--58398	17	3.0	17	94	2	86	25	28	0	46	1.53
58336--58450	44	2.6	45	80	13	155	26	26	0	46	1.53
58375--58456	27	3.0	27	92	3	128	26	26	0	46	1.53
58781--58867	31	2.8	32	79	11	92	26	12	2	58	1.46
64122--64160	20	2.0	20	89	0	60	48	0	0	51	1.00
64109--64176	15	4.3	16	72	14	61	44	0	0	55	0.99
64228--64273	18	2.6	19	76	13	53	54	0	2	43	1.12
64168--64274	58	1.9	55	85	12	146	51	1	2	43	1.27
64153--64284	20	6.5	20	65	24	55	50	1	2	46	1.23
69489--69536	23	2.1	23	88	0	69	35	10	18	35	1.85
69976--70044	23	3.2	22	84	8	81	37	21	4	36	1.74
69985--70055	19	3.5	19	86	7	79	33	22	2	40	1.69
70409--70458	23	2.2	23	92	0	82	38	22	6	34	1.78
71222--71269	21	2.3	21	92	0	78	37	22	6	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70007--72308	818	2.9	817	92	6	3778	39	10	7	42	1.68
69999--72113	412	5.2	414	94	3	3695	39	10	7	42	1.69

Tables:   1

The End!