genome.fa.s187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000187.1 Hibiscus syriacus cultivar Beakdansim tig00000336_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209407

Tables:   1   2   

This is table  1  of  2  ( 142 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216--269	2	27.5	2	96	3	101	48	0	0	51	1.00
3888--3933	13	3.6	13	82	5	58	54	0	2	43	1.12
4227--4394	92	1.8	92	96	0	309	44	8	10	36	1.70
6183--6226	20	2.4	18	80	20	56	38	0	6	54	1.27
10387--10424	14	2.7	14	84	11	51	21	10	28	39	1.86
14373--14421	20	2.5	20	100	0	98	26	24	18	30	1.98
17542--17594	26	2.0	26	96	0	97	37	9	24	28	1.86
18637--18711	23	3.2	23	75	1	78	21	17	22	38	1.93
22022--22067	12	4.2	11	78	18	51	26	0	0	73	0.83
22140--22168	8	3.6	8	100	0	58	51	13	0	34	1.42
24292--24329	2	19.0	2	100	0	76	50	0	0	50	1.00
31960--32185	13	15.8	14	64	24	55	65	8	3	23	1.36
32018--32182	44	3.8	44	90	1	260	67	6	3	21	1.29
32104--32184	25	3.5	25	70	25	86	69	7	3	19	1.28
32202--32295	47	2.0	47	93	0	161	18	14	30	36	1.91
32567--32618	21	2.5	21	75	12	61	26	15	28	28	1.96
36875--36996	43	2.8	43	79	7	113	31	20	24	23	1.98
36930--37045	43	2.7	43	85	6	146	34	21	24	19	1.96
37656--37687	13	2.4	14	94	5	57	37	15	21	25	1.93
37696--37757	23	2.7	23	87	0	79	35	17	27	19	1.94
41212--41314	43	2.4	42	80	7	109	25	27	15	32	1.96
44354--44407	14	3.9	14	83	9	67	46	3	5	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44337--44513	95	1.9	92	84	5	239	44	5	3	46	1.43
44414--44492	26	3.2	25	82	14	110	43	5	3	48	1.43
44581--44663	38	2.3	35	87	8	114	43	10	2	43	1.52
44470--44657	35	5.1	37	74	16	149	43	8	3	44	1.52
45019--45386	200	1.8	199	80	2	443	28	17	17	35	1.94
45019--45436	200	2.1	200	78	3	430	29	17	18	34	1.94
46799--46872	2	37.0	2	100	0	148	50	0	0	50	1.00
51347--51371	13	1.9	13	100	0	50	28	48	8	16	1.74
52857--53074	103	2.1	103	100	0	436	26	13	23	36	1.92
53091--53150	23	2.6	23	84	5	77	20	25	28	26	1.99
53081--53158	23	3.3	23	80	1	75	23	19	23	34	1.96
56467--56799	167	2.0	167	96	0	621	39	12	9	38	1.77
60461--60488	14	2.0	14	100	0	56	21	21	35	21	1.96
60834--60882	3	16.0	3	95	4	89	67	0	0	32	0.91
62024--62110	3	28.7	3	82	9	88	63	2	2	32	1.19
62164--62477	35	8.7	35	69	21	179	42	9	3	44	1.54
62246--62309	26	2.6	26	90	7	98	42	9	4	43	1.57
62212--62342	61	2.1	62	86	8	187	42	7	3	45	1.50
62176--62382	96	2.1	100	85	9	288	42	9	3	43	1.54
62863--62887	7	3.6	7	100	0	50	72	0	0	28	0.86
68537--68574	4	9.8	4	82	5	51	26	2	0	71	1.00
68538--68592	27	2.0	27	86	13	78	29	5	0	65	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69382--69445	21	3.1	21	74	12	62	34	3	1	60	1.22
69365--69428	24	2.9	22	79	6	67	35	1	1	60	1.15
70851--70892	15	3.0	14	83	10	50	19	19	7	54	1.66
76549--76861	114	2.7	114	93	0	509	31	14	21	32	1.93
79545--79599	22	2.5	22	84	0	74	32	14	16	36	1.89
80278--80455	76	2.3	76	93	0	293	25	19	20	34	1.96
80466--80883	111	3.8	112	93	2	700	36	15	20	27	1.92
80479--80889	223	1.9	222	92	2	612	37	15	20	27	1.92
82175--82231	27	2.0	29	87	12	84	29	5	0	64	1.15
92315--92367	10	5.3	10	80	6	63	86	7	3	1	0.75
92315--92374	30	2.0	30	87	6	86	83	10	5	1	0.87
99345--99377	15	2.2	15	100	0	66	60	21	6	12	1.53
101341--101386	2	23.0	2	100	0	92	50	0	0	50	1.00
101975--102008	14	2.4	14	90	0	50	73	0	0	26	0.83
102154--102190	18	2.1	18	89	0	56	8	27	8	56	1.56
103339--103399	16	3.8	16	91	0	104	57	22	11	8	1.60
103836--103869	10	3.4	10	95	0	59	55	23	11	8	1.63
105146--105188	2	21.5	2	100	0	86	48	0	0	51	1.00
112404--112447	16	2.6	17	75	7	54	43	0	0	56	0.99
112423--112475	20	2.7	20	77	14	56	41	3	0	54	1.18
116550--116593	19	2.3	18	81	11	52	75	4	4	15	1.14
116617--116715	9	10.4	9	74	18	53	71	2	6	20	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116851--116893	20	2.2	20	83	8	52	79	2	2	16	0.95
118466--118865	110	3.7	110	92	0	669	26	16	22	34	1.95
119900--119942	20	2.2	20	83	8	52	79	2	2	16	0.95
121524--121923	110	3.7	110	92	0	669	26	16	22	34	1.95
123602--123657	13	4.3	13	74	14	53	1	14	5	78	1.00
125708--125741	15	2.3	15	100	0	68	35	5	20	38	1.77
126856--126939	9	8.8	9	85	13	50	70	0	4	25	1.07
126893--126957	3	21.7	3	96	0	121	66	1	0	32	1.01
126893--126995	12	8.3	12	83	5	89	67	1	3	26	1.18
127008--127082	29	2.6	29	97	0	141	57	0	2	40	1.13
127162--127228	28	2.4	28	75	22	70	73	2	0	23	0.97
127162--127227	9	7.2	9	77	16	57	74	3	0	22	0.96
127615--127726	37	3.0	37	94	2	190	33	10	14	41	1.80
130972--131028	30	1.9	30	85	7	80	50	1	5	42	1.35
133185--133227	18	2.4	18	80	7	52	48	20	0	30	1.50
135821--135857	15	2.5	15	95	0	65	5	16	70	8	1.30
139740--140276	54	9.9	54	84	0	678	29	17	20	32	1.95
140264--140458	55	3.6	55	85	6	263	34	18	20	26	1.96
143719--143858	19	7.2	19	69	13	63	28	0	13	57	1.36
149989--150024	14	2.5	14	90	4	54	19	13	0	66	1.24
151704--151765	32	1.9	32	84	12	83	24	0	12	62	1.30
151741--151869	66	2.0	65	90	4	206	29	0	13	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153342--153384	18	2.4	18	100	0	86	32	6	27	32	1.84
153351--153390	18	2.2	18	90	0	62	40	5	25	30	1.77
153783--154150	54	6.9	54	84	2	445	30	18	18	33	1.95
153781--154149	162	2.3	160	87	1	506	30	18	18	33	1.95
153782--154281	54	9.3	54	80	8	287	30	18	18	32	1.95
154141--154364	55	4.1	55	89	4	339	34	19	19	26	1.96
156770--156800	2	15.5	2	93	0	53	48	0	0	51	1.00
157374--157418	22	2.0	23	86	4	65	44	13	17	24	1.85
162125--162247	61	2.0	62	90	1	194	40	8	9	41	1.68
162236--162281	17	2.7	17	80	9	58	54	4	0	41	1.20
165190--165355	43	3.9	42	79	10	158	22	22	6	48	1.72
165235--165393	85	1.9	85	81	7	198	23	22	6	48	1.73
170367--170960	70	8.5	69	73	10	352	26	22	16	34	1.95
170424--170960	210	2.6	210	84	2	668	26	22	16	34	1.95
170371--170960	140	4.2	140	74	7	462	26	22	16	34	1.95
170908--171069	39	4.4	38	71	14	149	29	27	16	27	1.97
170842--171069	109	2.1	109	97	0	429	28	25	15	29	1.96
170949--171082	70	1.9	70	87	3	198	27	26	15	30	1.96
170949--171101	70	2.2	70	84	4	184	26	26	16	29	1.97
171176--171528	102	3.5	102	79	3	363	41	14	12	32	1.83
171252--171333	25	3.2	24	75	21	78	43	9	13	32	1.77
171160--171542	51	7.5	50	75	7	258	41	14	12	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172912--173004	21	4.5	21	78	4	100	39	18	24	17	1.91
172912--173004	41	2.3	41	100	0	186	39	18	24	17	1.91
172931--173065	41	3.3	41	82	6	132	37	21	21	19	1.94
172993--173107	20	5.7	19	78	11	86	34	24	17	23	1.96
173581--173639	20	3.0	20	87	0	73	16	18	22	42	1.89
174959--175003	18	2.5	18	88	0	72	26	44	15	13	1.83
175485--175559	20	3.8	20	91	1	107	34	24	25	16	1.95
175544--175634	32	2.8	33	91	3	157	49	19	17	13	1.79
175695--175750	20	2.8	19	86	7	76	16	25	23	35	1.94
176714--176772	19	3.4	19	71	22	65	47	18	20	13	1.82

Tables:   1   2