genome.fa.s1895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001895.1 Hibiscus syriacus cultivar Beakdansim tig00003841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129488

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3298--3446	48	3.1	48	85	3	201	23	9	18	48	1.76
5474--5505	3	10.3	3	93	6	55	62	3	0	34	1.11
14826--14934	24	4.5	24	73	8	87	22	13	16	47	1.81
24181--24216	12	3.0	12	83	0	54	27	16	16	38	1.90
24160--24228	24	2.9	24	82	0	84	23	10	17	49	1.77
31948--31977	2	15.0	2	92	0	51	46	0	0	53	1.00
31995--32036	16	2.7	16	96	3	77	66	4	4	23	1.30
33387--33425	3	13.7	3	84	10	55	64	2	0	33	1.08
33387--33436	25	2.0	25	92	7	84	64	4	2	30	1.23
33801--34080	120	2.3	122	90	4	449	26	20	12	40	1.88
34223--34500	113	2.5	113	88	2	398	28	18	14	39	1.89
35641--35728	20	4.2	20	84	10	97	56	4	6	31	1.46
35647--35728	41	2.0	43	85	9	116	58	3	7	30	1.43
46683--47240	278	2.0	278	100	0	1116	33	17	16	32	1.93
47350--47413	32	2.0	32	96	3	121	37	25	17	20	1.93
51750--51789	19	2.1	19	85	0	53	52	0	10	37	1.35
54326--54414	3	29.7	3	90	4	144	34	0	2	62	1.07
58270--58411	55	2.6	54	85	4	176	41	13	23	21	1.88
58764--58813	6	8.2	6	78	12	57	22	18	14	46	1.84
58767--58813	13	3.8	13	83	5	62	23	19	14	42	1.88
68340--68370	12	2.5	12	94	5	53	83	0	16	0	0.64
71142--71310	37	4.6	37	89	2	250	34	23	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71155--71291	73	1.9	73	95	0	247	35	23	19	21	1.96
71155--71310	73	2.1	73	90	1	222	34	23	17	23	1.96
71714--71892	55	3.3	55	88	0	261	29	14	25	30	1.95
71714--71917	55	3.7	55	86	3	180	29	15	25	28	1.96
71890--72087	54	3.7	53	85	4	243	31	20	21	26	1.98
71890--72086	108	1.8	109	84	1	270	31	20	21	26	1.98
72262--72358	3	32.7	3	87	6	117	37	1	2	59	1.16
85960--86013	22	2.5	22	96	0	99	18	11	12	57	1.64
86524--86806	2	151.5	2	66	29	112	51	5	1	41	1.34
86521--86800	5	55.0	5	68	22	88	51	5	1	41	1.34
86499--86793	7	41.4	7	68	24	149	52	5	1	40	1.34
86521--86807	44	6.2	47	72	19	169	51	5	1	41	1.34
86521--86798	12	23.7	12	69	19	140	51	5	1	41	1.35
86518--86776	61	4.4	59	76	17	197	50	6	1	41	1.35
88427--88469	22	2.0	22	90	0	68	48	0	11	39	1.40
89021--89117	52	1.9	51	85	4	133	40	10	14	35	1.80
93316--93399	34	2.5	33	81	12	91	61	14	2	21	1.43
93312--93388	34	2.2	34	84	11	95	61	16	1	20	1.42
93436--93479	23	1.9	23	85	0	61	68	11	0	20	1.20
93864--93926	33	1.9	33	87	6	92	26	20	36	15	1.93
95539--95601	24	2.7	24	92	2	101	57	4	0	38	1.20
95719--95759	20	2.0	21	86	13	59	68	2	0	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96378--96412	17	2.1	17	88	0	52	45	2	0	51	1.16
96543--96569	14	1.9	14	100	0	54	29	0	3	66	1.09
98086--98125	18	2.2	19	90	4	64	62	0	7	30	1.23
98278--98312	16	2.2	16	89	0	52	62	5	14	17	1.49
99848--100016	91	1.8	93	91	2	279	24	24	26	24	2.00
99926--100410	130	3.7	128	87	4	648	24	19	30	24	1.98
100123--100359	43	5.6	43	75	12	168	25	18	32	23	1.97
100025--100359	40	7.9	42	71	13	188	26	18	31	24	1.97
99927--100410	259	1.9	262	86	4	710	24	19	30	25	1.98
100090--100417	46	7.5	44	73	14	207	25	18	30	24	1.98
100450--100518	28	2.4	28	88	7	95	44	14	11	28	1.80
100815--100862	15	2.9	16	79	14	53	39	8	20	31	1.82
101242--101385	67	2.2	66	83	6	175	45	11	13	29	1.79
101339--101402	30	2.1	30	91	0	101	39	15	9	35	1.80
101390--101492	52	2.0	53	94	1	181	35	18	13	32	1.90
101488--101613	28	4.5	28	82	5	137	47	15	10	26	1.77
101503--101599	29	3.4	28	86	6	133	46	15	10	27	1.78
101857--101954	36	2.8	35	80	6	110	32	13	19	34	1.90
101858--101971	36	3.2	36	76	7	101	35	14	20	30	1.92
102628--102668	10	4.1	10	81	18	50	19	0	29	51	1.47
102627--102668	18	2.5	16	92	7	66	21	0	28	50	1.49
104521--104591	20	3.1	23	70	22	76	42	11	22	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104509--104583	20	3.5	20	70	20	62	37	10	25	26	1.89
104520--104598	26	3.3	25	69	20	78	44	10	21	24	1.83
104505--104600	46	2.1	45	90	1	147	40	9	23	26	1.85
107027--107088	31	2.0	32	96	3	117	62	9	12	14	1.53
108770--108809	18	2.2	19	90	4	64	62	0	7	30	1.23
108946--108980	16	2.2	16	89	0	52	62	5	14	17	1.49
110504--110544	3	13.7	3	100	0	82	34	0	0	65	0.93
112630--112669	13	3.0	13	81	3	53	22	15	12	50	1.77
115661--115722	30	2.0	31	90	3	99	38	35	4	20	1.74
116072--116158	29	2.9	30	74	15	90	29	19	8	42	1.80
117592--117774	99	1.8	99	80	2	215	40	16	12	30	1.85
118281--118372	25	3.7	24	82	7	121	36	17	1	44	1.56
122106--122175	34	2.1	32	89	5	104	21	31	15	31	1.95

Tables:   1

The End!