genome.fa.s1896.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001896.1 Hibiscus syriacus cultivar Beakdansim tig00003842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131627

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7658--7775	58	2.0	60	86	3	168	39	5	42	11	1.66
10896--10922	2	13.5	2	100	0	54	51	0	0	48	1.00
14779--14811	18	1.9	18	88	11	52	33	0	3	63	1.10
14779--14812	15	2.2	16	89	5	52	32	0	2	64	1.08
16787--16840	21	2.6	21	76	5	65	33	0	12	53	1.39
16810--16875	28	2.4	28	80	10	89	33	0	10	56	1.34
20502--20776	49	5.6	49	89	4	378	42	0	11	45	1.45
20553--20776	97	2.3	98	93	0	378	42	0	11	44	1.46
20732--20806	31	2.4	31	95	0	132	38	0	10	50	1.37
20790--20821	10	3.2	10	95	0	55	43	0	9	46	1.35
21013--21047	11	3.1	11	95	4	61	54	0	2	42	1.15
21073--21380	26	12.3	26	78	11	286	45	2	7	44	1.46
21073--21356	100	2.9	100	84	6	364	45	2	7	44	1.46
21180--21367	14	15.2	11	73	17	115	46	1	7	44	1.42
23263--23297	17	2.2	15	90	10	52	57	5	0	37	1.23
23750--23806	26	2.2	25	81	6	69	7	35	10	47	1.65
23979--24031	27	2.0	27	85	7	72	28	16	49	5	1.69
28036--28064	15	1.9	15	100	0	58	10	13	27	48	1.75
28428--28686	134	2.0	129	87	5	367	44	3	7	44	1.51
28437--28686	130	1.9	131	86	5	319	45	4	7	43	1.50
33148--33263	60	1.9	60	85	0	160	47	6	13	32	1.68
34451--34590	60	2.3	61	80	4	151	44	5	19	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35294--35328	16	2.2	16	89	0	52	51	0	0	48	1.00
43196--43231	3	12.0	3	87	0	54	66	5	0	27	1.13
43819--43856	18	2.1	19	85	9	53	50	2	5	42	1.39
43865--43951	43	2.0	43	100	0	174	58	6	2	32	1.37
44073--44102	6	5.2	6	92	8	53	16	66	0	16	1.25
44073--44102	11	2.6	11	94	5	51	16	66	0	16	1.25
48962--49004	22	2.0	22	86	13	63	62	2	4	30	1.28
49259--49619	183	2.0	183	94	1	643	38	22	11	27	1.88
57529--57558	14	2.1	15	93	6	53	40	0	0	60	0.97
57557--57609	3	17.7	3	92	0	79	60	0	1	37	1.08
57926--58480	116	4.9	114	90	4	809	30	20	11	37	1.88
57926--58480	226	2.4	227	90	2	862	30	20	11	37	1.88
59209--59789	83	7.0	83	98	0	1099	36	21	14	28	1.92
60909--60942	9	3.7	9	84	7	50	0	11	0	88	0.52
60909--60943	10	3.6	10	88	3	54	0	11	0	88	0.51
60911--60947	11	3.2	11	88	11	56	0	13	0	86	0.57
71141--71172	15	2.1	15	94	5	55	0	28	0	71	0.86
71574--71603	14	2.1	15	93	6	53	40	0	0	60	0.97
71602--71684	3	27.7	3	92	0	139	62	0	2	34	1.08
73649--73738	36	2.6	33	75	8	83	38	1	2	57	1.18
75506--75620	21	5.4	20	82	13	117	20	33	25	21	1.97
75510--75620	43	2.6	42	91	4	179	19	32	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80752--80874	24	5.1	24	89	0	156	25	14	18	41	1.89
82897--82959	23	2.7	23	92	0	99	38	20	4	36	1.74
82537--83590	429	2.5	429	98	0	2063	38	12	7	41	1.71
83326--83388	23	2.7	23	92	0	99	38	20	4	36	1.74
83810--83895	39	2.2	39	89	0	127	18	12	17	51	1.76
84516--84578	23	2.7	23	92	0	99	38	20	4	36	1.74
84923--84988	25	2.6	25	80	0	87	42	13	9	34	1.76
87450--87942	183	2.7	183	93	0	853	33	17	15	33	1.91
89446--89546	12	8.4	12	84	0	103	20	33	7	37	1.82
89446--89549	6	17.3	6	78	4	75	20	33	7	38	1.81
91008--92365	199	6.9	199	96	1	2443	31	17	15	35	1.91
91008--92365	397	3.4	397	96	1	2473	31	17	15	35	1.91
92487--92535	19	2.6	19	90	6	73	57	8	2	32	1.40
94323--94388	33	2.0	33	90	0	105	22	48	0	28	1.51
94421--94464	21	2.1	21	91	0	70	15	31	11	40	1.83
96858--96904	20	2.3	20	89	10	78	17	17	10	55	1.69
96953--97899	457	2.1	456	97	1	1790	39	8	7	45	1.62
96953--97899	229	4.1	229	98	0	1794	39	8	7	45	1.62
98773--98802	2	15.0	2	92	0	51	46	0	0	53	1.00
99984--100028	21	2.1	21	84	8	56	53	0	0	46	1.00
101305--101332	14	2.0	14	100	0	56	14	21	21	42	1.88
105009--105054	23	2.0	23	91	0	74	26	8	17	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105089--105132	23	1.9	23	85	0	61	31	13	6	47	1.69
108822--109540	229	3.1	229	95	0	1282	44	6	8	40	1.61
109589--109635	20	2.4	19	89	10	76	55	10	17	17	1.69
109769--109815	20	2.4	19	79	10	58	55	10	14	19	1.68
109778--109820	20	2.3	20	88	11	65	53	11	13	20	1.71
110478--110541	23	2.8	23	82	0	83	37	4	18	39	1.72
110960--111023	23	2.8	23	90	0	101	35	4	21	37	1.75
111439--111502	23	2.8	23	90	0	101	35	4	21	37	1.75
111920--111983	23	2.8	23	90	0	101	35	4	21	37	1.75
110421--112386	481	4.1	482	97	0	3726	40	7	11	40	1.69
114799--114858	23	2.6	22	74	7	66	36	0	0	63	0.95
115126--115158	16	2.1	16	88	11	50	48	6	3	42	1.43
130303--130349	24	2.0	24	91	0	76	27	27	14	29	1.96

Tables:   1

The End!