genome.fa.s1916.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001916.1 Hibiscus syriacus cultivar Beakdansim tig00003878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77802

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60--101	21	2.0	21	85	0	57	38	2	2	57	1.25
4035--4087	20	2.8	18	78	16	54	50	3	0	45	1.19
9004--9033	13	2.3	13	100	0	60	50	13	10	26	1.73
9196--9297	20	5.2	20	60	9	57	32	20	16	30	1.95
9185--9509	39	8.3	39	93	0	506	29	20	16	33	1.95
9443--9552	36	3.0	36	82	4	103	28	19	13	39	1.89
9494--9691	66	3.0	66	80	4	245	32	18	12	36	1.88
11016--11048	14	2.3	15	89	5	50	39	3	3	54	1.31
11745--11852	54	2.0	54	100	0	216	38	9	12	38	1.76
16986--17015	13	2.3	13	94	0	51	53	6	10	30	1.60
20642--20768	60	2.1	60	80	0	146	33	14	12	39	1.84
20928--21094	83	2.0	83	91	3	273	40	11	16	31	1.84
21055--21190	60	2.3	59	88	3	193	32	19	18	30	1.95
22172--22249	34	2.2	35	82	8	88	46	17	3	32	1.67
22325--22363	4	9.8	4	88	0	60	28	23	20	28	1.99
22626--22685	4	15.0	4	89	5	68	41	25	6	26	1.80
22616--22675	27	2.2	27	96	0	111	38	25	10	26	1.87
22619--22685	23	2.8	24	91	8	111	40	25	7	26	1.82
22747--22779	15	2.1	16	88	5	50	42	21	6	30	1.77
22794--22848	7	8.0	7	79	4	67	20	0	34	45	1.51
22803--22848	14	3.3	14	93	0	74	19	0	34	45	1.51
23262--23396	15	9.0	15	72	16	102	42	4	5	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23262--23336	28	2.6	28	85	4	87	41	8	5	45	1.56
23327--23385	18	3.3	18	81	11	77	47	0	3	49	1.18
23262--23396	13	10.2	13	71	16	82	42	4	5	47	1.46
23313--23417	49	2.1	48	81	10	113	46	2	2	47	1.32
23204--23426	13	16.8	13	67	20	60	43	4	3	47	1.42
30122--30685	300	1.9	301	92	0	941	36	17	15	30	1.90
32478--32726	128	2.0	128	92	0	419	36	19	17	26	1.94
32889--32972	41	2.0	41	97	0	159	41	15	4	38	1.68
33279--33316	19	2.1	18	90	9	60	50	5	2	42	1.39
35787--36044	84	3.0	84	90	1	390	43	12	14	30	1.81
35994--36141	60	2.5	61	84	3	192	33	17	17	31	1.93
36583--36618	4	9.0	4	100	0	72	75	0	0	25	0.81
37339--37491	78	2.0	79	82	7	188	41	7	5	44	1.57
42418--42516	49	2.0	49	100	0	198	42	10	6	41	1.63
44236--44390	78	2.0	80	84	7	210	41	7	5	45	1.55
45634--45673	2	20.0	2	100	0	80	50	0	0	50	1.00
46575--46618	3	15.0	3	88	4	63	36	2	0	61	1.09
46665--46743	23	3.4	23	91	0	131	40	39	13	6	1.71
47195--47234	16	2.5	16	91	0	62	52	7	37	2	1.43
49846--49903	3	18.7	3	82	7	71	65	1	0	32	1.03
50048--50813	236	3.2	238	86	3	978	33	16	15	34	1.90
50734--50813	42	1.9	42	84	5	108	33	21	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50948--51033	41	2.1	42	82	6	104	31	22	18	27	1.97
50721--51869	237	4.8	237	89	1	1683	34	18	15	31	1.92
50729--51869	475	2.4	474	88	1	1701	34	18	15	31	1.92
56326--56383	19	3.1	19	79	0	62	18	31	17	32	1.94
61219--61280	19	3.3	19	81	2	81	27	32	11	29	1.91
61823--61881	27	2.1	29	78	12	70	42	22	15	20	1.89
65800--65845	22	2.1	22	95	0	83	30	6	17	45	1.73
66645--66703	27	2.1	27	90	3	91	40	23	13	22	1.89
67632--67905	137	2.0	137	97	0	512	28	14	15	41	1.87

Tables:   1

The End!