genome.fa.s1964.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001964.1 Hibiscus syriacus cultivar Beakdansim tig00003968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119397

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1116--1155	21	1.9	21	89	0	62	60	5	2	32	1.32
1798--1822	2	12.5	2	100	0	50	52	0	0	48	1.00
8375--8476	31	3.3	31	95	0	186	39	21	18	20	1.93
12567--12617	21	2.4	21	100	0	102	29	29	33	7	1.85
12726--12754	3	9.7	3	100	0	58	68	0	31	0	0.89
13448--13996	197	2.8	197	79	7	463	33	10	20	36	1.86
15540--15785	80	3.1	80	84	2	307	41	9	11	37	1.74
15987--16072	35	2.4	36	79	11	97	33	8	31	26	1.86
21172--21243	35	2.0	37	89	5	112	43	15	12	29	1.83
21658--21691	2	17.0	2	100	0	68	50	0	0	50	1.00
21736--21785	25	2.1	25	82	14	61	38	4	0	58	1.17
21949--21982	16	2.1	16	88	0	50	32	5	0	61	1.20
25301--25355	23	2.4	23	85	14	78	80	5	14	0	0.89
25301--25371	12	6.1	11	71	18	54	80	5	12	1	0.95
25307--25364	14	4.4	14	73	24	54	79	6	13	0	0.93
25983--26031	22	2.2	22	92	0	80	36	22	12	28	1.90
26892--26996	36	2.9	37	92	1	167	23	23	13	39	1.90
26910--27367	102	4.5	102	93	0	781	29	20	12	37	1.90
27114--27200	37	2.4	37	88	1	122	25	20	12	41	1.88
27216--27302	37	2.4	37	88	1	122	25	20	13	40	1.89
27252--27430	63	2.8	64	92	2	288	30	20	12	36	1.89
27150--27465	165	1.9	168	92	2	530	29	20	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27538--27609	37	1.9	37	82	0	90	29	22	8	40	1.83
27960--28930	98	9.4	98	78	10	804	32	24	21	21	1.98
27968--28927	203	4.6	204	84	6	1101	32	24	21	21	1.98
27955--28930	109	9.4	104	78	9	826	32	24	21	21	1.98
29388--29459	35	2.0	37	89	5	112	44	13	12	29	1.81
29903--29988	11	7.3	11	72	21	50	34	3	2	59	1.27
30155--30188	16	2.1	16	88	0	50	32	5	0	61	1.20
30205--30244	17	2.4	16	84	12	53	45	2	0	52	1.14
32031--32097	2	33.5	2	100	0	134	49	0	0	50	1.00
35582--35634	25	2.1	26	89	3	81	54	3	7	33	1.46
35623--35666	20	2.2	21	88	8	65	65	2	2	29	1.16
36744--36790	24	2.0	24	95	0	85	53	23	12	10	1.70
36748--36800	24	2.2	24	86	0	70	50	24	13	11	1.73
38159--38211	26	2.1	25	86	10	72	64	1	3	30	1.22
41021--41071	25	2.2	24	83	13	63	47	15	0	37	1.46
49300--49348	23	2.2	22	92	7	82	26	8	4	61	1.42
54427--54477	3	17.0	3	100	0	102	66	0	0	33	0.92
55152--55259	32	3.3	32	80	14	123	28	15	4	50	1.64
55475--55527	14	3.8	14	74	18	56	22	15	5	56	1.60
56567--56624	10	5.7	10	77	4	62	12	3	8	75	1.14
56595--56632	16	2.3	16	90	4	58	7	2	10	78	1.04
64196--64348	83	1.8	83	82	0	198	32	27	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64170--64367	83	2.4	83	76	1	182	33	25	17	22	1.96
64394--64587	61	3.2	58	68	16	142	39	24	9	26	1.86
64394--64725	122	2.7	122	81	0	396	37	24	11	26	1.89
65827--65934	32	3.3	32	86	10	139	27	15	4	51	1.63
66147--66184	15	2.5	15	83	8	51	23	5	5	65	1.34
66664--66736	20	3.5	21	83	14	82	16	6	2	73	1.16
68194--68248	22	2.7	20	80	5	56	34	14	14	36	1.87
72803--72838	18	2.1	18	89	5	56	66	2	5	25	1.27
73198--73302	37	2.8	37	88	0	147	29	13	14	42	1.83
73845--74475	105	6.0	105	88	3	862	22	16	26	34	1.95
74675--74750	36	2.1	36	90	0	116	40	15	21	22	1.90
74650--74969	106	3.1	104	91	4	506	36	12	20	30	1.89
74872--74946	39	1.9	39	83	5	98	37	13	22	26	1.91
76337--76873	183	2.9	183	94	1	934	31	21	19	27	1.98
80915--80946	2	16.0	2	100	0	64	50	0	0	50	1.00
81137--81187	25	2.1	25	85	3	68	76	0	3	19	0.94
81451--81482	16	2.1	15	94	5	55	68	0	6	25	1.12
81843--81947	37	2.8	37	85	0	138	29	14	14	41	1.85
82258--82306	15	3.3	15	79	0	53	6	48	22	22	1.72
90623--90679	26	2.2	26	100	0	114	10	19	22	47	1.80
91825--91891	23	2.9	23	95	0	116	38	7	16	37	1.77
92099--92167	30	2.4	30	83	16	76	20	2	14	62	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92248--92297	23	2.2	23	85	0	64	28	26	12	34	1.92
93141--93204	31	2.1	31	88	2	94	40	4	12	42	1.64
101513--101552	21	1.9	21	89	0	62	37	35	0	27	1.57
102770--102842	23	3.1	23	76	17	62	16	1	26	56	1.49
106798--106959	64	2.5	64	80	10	179	33	18	20	27	1.96
108282--108421	22	6.5	22	91	3	225	14	25	32	28	1.94
113032--113207	90	2.0	90	95	0	316	45	6	9	38	1.64

Tables:   1

The End!