genome.fa.s1966.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001966.1 Hibiscus syriacus cultivar Beakdansim tig00003973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  458221

Tables:   1   2   3   

This is table  2  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148344--148396	17	3.2	17	78	13	65	49	0	3	47	1.19
148331--148396	33	2.1	33	88	5	100	53	0	3	43	1.16
148463--148520	22	2.6	21	81	10	71	56	1	1	39	1.19
156376--156506	65	2.0	65	83	0	163	41	13	10	34	1.79
158476--158518	20	2.3	19	80	11	52	25	27	9	37	1.87
166592--166646	26	2.1	26	96	0	101	32	16	14	36	1.89
168880--168941	31	2.0	31	81	9	74	43	0	1	54	1.09
170210--170261	24	2.2	23	80	10	59	36	5	1	55	1.35
177099--177205	47	2.2	51	83	12	136	28	23	18	29	1.98
181340--181376	18	2.1	18	100	0	74	21	21	29	27	1.99
182885--183105	110	2.0	111	93	0	381	46	9	8	35	1.67
183229--183269	10	4.1	10	84	12	57	39	0	29	31	1.57
183314--183339	11	2.4	11	100	0	52	15	0	84	0	0.62
183353--183477	51	2.5	51	90	1	189	17	32	36	14	1.90
184216--184283	30	2.3	30	92	0	109	13	20	33	32	1.91
184797--184863	30	2.2	30	94	0	116	32	31	22	13	1.92
186787--186833	19	2.5	20	75	6	53	44	0	2	53	1.12
197750--197852	31	3.3	31	80	2	100	43	8	17	30	1.79
198627--198720	40	2.3	40	92	0	152	44	21	21	12	1.85
204816--204853	2	19.0	2	100	0	76	50	0	50	0	1.00
208169--208210	3	14.0	3	80	9	50	61	2	0	35	1.09
208424--208766	134	2.6	135	84	2	424	23	18	30	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208774--208873	28	3.5	28	81	9	103	43	14	19	24	1.87
208981--209113	38	3.8	33	77	14	117	39	12	15	32	1.85
208981--209116	74	1.9	72	85	8	188	38	12	14	33	1.84
209081--209219	65	2.2	63	85	2	179	43	12	11	32	1.78
209399--209459	31	1.9	31	87	9	88	40	13	14	31	1.84
209319--209525	98	2.1	96	80	9	215	40	12	17	29	1.86
210007--210046	21	2.0	21	90	5	64	50	12	15	22	1.77
210147--210341	104	1.9	104	81	5	243	36	11	15	36	1.84
210309--210449	36	3.9	35	85	3	183	38	10	18	32	1.85
210309--210449	71	2.0	72	88	1	212	38	10	18	32	1.85
211238--211293	23	2.4	22	77	11	58	48	3	12	35	1.58
212149--212250	7	15.4	7	71	18	51	0	15	9	73	1.14
212155--212226	18	3.5	21	76	19	80	0	15	9	75	1.05
212165--212239	33	2.3	32	84	4	96	0	14	9	76	1.03
212874--212927	28	2.0	27	85	3	72	42	12	16	27	1.85
217062--217102	22	1.9	22	90	5	66	58	7	2	31	1.38
218962--219010	23	2.2	23	82	10	57	61	8	0	30	1.25
218961--219014	3	18.0	3	77	7	56	61	7	0	31	1.24
221796--221827	2	16.0	2	100	0	64	50	0	0	50	1.00
222210--222280	32	2.2	32	94	0	124	32	16	2	47	1.61
223002--223035	3	11.0	3	93	6	59	35	0	0	64	0.94
226350--226401	26	2.0	26	85	11	70	53	11	7	26	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227184--227232	26	1.9	26	87	4	73	38	0	4	57	1.18
227946--227996	21	2.4	21	83	12	68	58	0	0	41	0.98
234468--234524	5	11.4	5	92	0	69	70	0	5	24	1.08
241773--241863	31	3.0	31	86	1	130	42	12	15	29	1.83
243324--243350	13	2.1	13	100	0	54	25	14	37	22	1.93
248955--249051	49	2.0	50	91	2	160	30	17	20	30	1.96
254077--254375	156	1.9	157	97	2	575	33	17	21	28	1.96
254341--254573	118	2.0	118	93	1	405	31	16	20	31	1.95
269419--269467	24	2.1	23	88	3	71	24	8	59	8	1.54
269859--269945	32	2.7	31	85	5	111	36	13	8	41	1.74
270119--270219	31	3.5	29	80	9	107	36	15	9	37	1.81
273397--273486	47	1.9	47	90	0	144	31	10	20	38	1.85
285931--285971	2	20.5	2	100	0	82	51	0	48	0	1.00
286339--286701	185	2.0	183	91	2	584	45	7	3	43	1.49
288774--288817	14	3.1	14	86	3	61	22	2	0	75	0.92
290727--290767	21	2.0	21	95	0	73	41	12	21	24	1.87
291907--291973	31	2.2	31	81	5	73	31	23	8	35	1.86
292831--292881	14	3.6	14	89	2	75	21	1	0	76	0.88
294078--294133	26	2.2	26	86	0	76	21	5	1	71	1.15
299023--299069	2	23.5	2	100	0	94	51	0	48	0	1.00
299426--299797	185	2.0	183	90	2	584	46	7	3	43	1.48
300360--300728	20	18.5	20	85	4	458	34	26	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301402--301448	24	2.0	24	87	8	69	25	14	21	38	1.92
301623--301647	12	2.1	12	100	0	50	72	0	28	0	0.86
303953--304259	19	17.4	19	79	16	358	47	18	20	14	1.83
303981--304259	52	5.2	53	90	5	358	47	17	20	14	1.83
304020--304259	71	3.4	71	83	11	355	47	17	20	15	1.83
303953--304291	142	2.4	137	89	6	497	46	18	20	14	1.83
304288--304389	19	5.6	19	85	12	151	14	23	17	44	1.86
304496--304532	14	2.6	14	91	0	65	45	21	0	32	1.52
304527--304599	12	6.0	12	67	20	53	57	16	1	24	1.47
304513--304585	38	1.9	38	97	0	137	53	16	1	28	1.51
306458--306514	14	3.7	14	77	20	60	45	22	21	10	1.82
306439--306531	33	2.8	33	95	0	168	47	21	20	10	1.80
306402--306536	19	7.6	19	76	16	128	45	23	19	11	1.82
306532--306660	19	7.3	19	75	17	125	8	17	28	45	1.77
306532--306623	33	2.8	33	93	3	150	7	18	28	45	1.76
306704--307175	93	5.1	93	99	0	930	46	18	12	22	1.83
306704--307175	185	2.6	185	98	1	928	46	18	12	22	1.83
308730--308815	45	1.9	45	100	0	172	56	16	4	22	1.58
308730--308825	45	2.1	45	94	3	167	59	15	4	20	1.53
308887--308943	14	3.7	14	79	20	69	40	24	26	8	1.84
308879--308963	33	2.5	33	90	1	143	44	21	24	9	1.81
308901--308985	19	4.7	19	79	16	90	43	22	23	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308997--309051	14	3.6	14	73	21	56	9	27	23	40	1.85
309172--309242	33	2.2	33	94	0	124	47	16	23	11	1.79
309424--309478	22	2.5	22	81	0	74	20	16	40	23	1.91
309624--309817	20	9.6	20	82	5	221	19	19	25	35	1.95
309624--309817	60	3.2	60	83	0	253	19	19	25	35	1.95
309810--309886	21	3.7	20	70	13	57	27	16	23	32	1.96
309872--309923	20	2.6	20	96	0	95	21	13	26	38	1.90
310822--310870	20	2.5	20	79	0	62	38	8	14	38	1.76
311588--311924	167	2.0	167	97	0	629	37	12	12	37	1.81
315977--316017	21	2.0	21	95	0	73	41	12	21	24	1.87
317153--317222	31	2.3	31	87	0	95	30	22	10	37	1.87
317168--317230	31	2.0	31	96	0	117	25	23	12	38	1.90
318791--318851	31	2.0	31	93	0	104	24	18	14	42	1.88
319841--319882	15	2.8	15	72	13	50	11	0	40	47	1.40
322509--322555	19	2.4	19	82	10	51	44	6	8	40	1.60
328513--328578	33	2.0	34	90	3	107	30	12	19	37	1.88
330359--330527	60	2.8	60	78	12	170	41	6	18	33	1.76
334161--334215	12	4.6	12	79	0	65	12	14	47	25	1.80
334275--334311	2	19.0	2	94	5	67	48	0	0	51	1.00
334577--334625	2	24.5	2	95	0	89	48	48	0	2	1.12
335035--335082	25	1.9	25	82	0	60	31	8	20	39	1.82
341802--341828	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347941--348008	23	3.0	23	86	0	100	17	26	26	29	1.98
351159--351212	17	3.2	17	78	2	56	46	1	0	51	1.11
352448--352509	20	3.1	19	81	4	70	41	16	19	22	1.89
355683--355724	22	1.9	22	95	0	75	45	0	2	52	1.13
356622--356730	25	4.4	25	70	12	64	55	3	2	37	1.32
364412--364445	17	2.1	17	88	5	52	35	0	0	64	0.94
385066--385158	21	4.5	21	75	4	91	40	18	23	17	1.90
385066--385158	41	2.3	41	98	0	177	40	18	23	17	1.90
385085--385219	41	3.3	41	81	6	123	39	20	20	19	1.93
385147--385241	20	4.7	20	80	2	91	34	24	17	23	1.96

Tables:   1   2   3