genome.fa.s1966.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001966.1 Hibiscus syriacus cultivar Beakdansim tig00003973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  458221

Tables:   1   2   3   

This is table  3  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385429--385472	22	2.0	22	95	0	79	20	45	15	18	1.85
385736--385773	20	1.9	20	88	0	58	13	15	21	50	1.78
387080--387119	21	1.9	21	94	0	71	12	25	40	22	1.89
387379--387439	30	2.0	30	90	6	97	42	11	4	40	1.62
389826--389888	20	3.0	20	77	6	63	17	28	34	19	1.94
393677--393716	21	1.9	21	85	10	55	35	10	2	52	1.48
395633--395672	21	1.9	21	94	0	71	12	25	40	22	1.89
395934--395994	30	2.0	30	90	6	97	42	11	4	40	1.62
396731--396793	18	3.5	18	91	0	90	26	44	14	14	1.83
397274--397339	19	3.4	19	79	4	69	39	24	21	15	1.91
397400--397466	19	3.5	19	83	4	89	14	23	23	37	1.93
397412--397466	20	2.8	19	89	5	83	16	25	23	34	1.95
399305--399340	14	2.6	14	90	0	54	30	0	22	47	1.52
399421--399465	18	2.4	18	85	3	54	37	22	22	17	1.94
399452--399498	19	2.5	19	96	0	85	51	17	17	14	1.77
399452--399505	19	2.8	19	86	5	74	51	16	18	12	1.75
399536--399592	19	2.9	20	84	5	71	21	22	19	36	1.95
399953--399988	14	2.6	14	90	0	54	30	0	22	47	1.52
400092--400145	14	3.5	14	75	22	54	50	18	20	11	1.77
400073--400150	33	2.4	33	88	0	111	43	20	23	12	1.86
400102--400138	19	1.9	19	88	0	56	51	16	21	10	1.74
400169--400227	20	2.9	20	92	2	91	16	23	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399065--401024	635	3.1	640	92	6	3189	32	12	19	35	1.89
400590--400625	14	2.6	14	90	0	54	30	0	22	47	1.52
400737--400773	19	1.9	19	94	0	65	51	13	21	13	1.75
400727--400782	14	3.6	14	76	21	58	46	17	21	14	1.84
400708--400785	33	2.4	33	88	0	111	42	20	23	14	1.88
400804--400841	20	1.9	20	100	0	76	15	21	26	36	1.93
401823--401876	24	2.2	24	86	0	72	25	16	18	38	1.92
402048--402072	12	2.1	12	100	0	50	72	0	28	0	0.86
404306--404436	19	7.7	19	64	23	85	42	19	22	15	1.88
404306--404432	33	3.8	33	87	4	193	42	18	22	15	1.89
404307--404439	66	2.0	66	95	0	239	41	18	22	17	1.90
404432--404474	20	2.2	20	87	4	61	16	18	23	41	1.89
404615--404651	14	2.6	14	91	0	65	45	24	0	29	1.53
406011--406077	21	3.2	21	68	4	55	19	20	35	23	1.95
406011--406133	42	2.9	41	80	7	113	22	17	36	22	1.95
408135--408195	20	3.1	20	76	17	56	44	18	22	14	1.86
408160--408257	33	2.9	33	87	1	133	39	25	22	12	1.89
408135--408319	19	10.1	19	76	14	165	43	21	21	12	1.86
408230--408319	39	2.3	38	94	1	153	46	21	20	12	1.82
408315--408360	20	2.4	19	85	7	65	10	15	26	47	1.78
408916--408968	20	2.7	20	93	0	88	26	20	28	24	1.99
408977--409030	20	2.7	20	97	0	99	25	18	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408917--409033	61	1.9	61	85	0	162	23	17	24	33	1.97
408917--409051	61	2.2	61	81	2	155	22	20	24	32	1.98
417373--417420	20	2.4	20	86	6	62	37	14	18	29	1.91
418420--418583	60	2.7	59	80	7	159	32	21	6	40	1.78
424034--424060	9	3.0	9	100	0	54	33	33	11	22	1.89
428081--428128	23	2.1	23	88	0	69	35	12	18	33	1.89
428333--428398	29	2.2	29	81	7	71	45	0	3	51	1.16
428554--428616	23	2.7	23	87	0	90	38	22	4	34	1.75
429039--429124	39	2.2	39	93	0	145	18	13	18	48	1.80
429133--429225	35	2.7	35	98	0	177	23	12	26	36	1.91
429419--429455	18	2.1	18	89	0	56	51	10	5	32	1.60
429889--429951	23	2.7	23	92	0	99	38	20	4	36	1.74
430297--430362	25	2.6	25	78	0	78	42	13	7	36	1.73
432833--433325	183	2.7	183	96	0	907	33	16	15	34	1.90
434827--434907	3	27.0	3	75	0	72	24	34	4	35	1.77
434831--434919	12	7.4	12	84	0	88	22	34	6	35	1.81
434843--434919	36	2.1	36	87	0	109	22	35	7	35	1.83
436385--437550	198	5.9	198	97	1	2169	31	16	15	36	1.90
437660--437699	19	2.1	19	90	0	62	55	10	2	32	1.47
439486--439551	33	2.0	33	90	0	105	22	48	0	28	1.51
439585--439649	21	3.1	21	79	0	76	16	30	13	38	1.88
441881--441928	21	2.4	19	80	13	60	18	16	10	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442058--442100	20	2.3	18	82	17	61	18	16	11	53	1.72
442063--442108	20	2.3	19	89	10	74	17	15	10	56	1.67
441848--442321	182	2.6	182	89	1	700	26	16	13	42	1.86
442387--442873	229	2.1	228	95	0	875	39	7	7	44	1.61
444207--444261	28	2.0	28	82	7	67	40	5	10	43	1.63
444941--444990	12	4.2	12	82	5	57	50	0	0	50	1.00
444923--444980	23	2.4	23	82	5	71	50	1	0	48	1.11
445395--445452	24	2.5	22	79	17	64	53	1	0	44	1.10
445583--445643	23	2.7	23	82	12	72	50	1	0	47	1.10
452646--452671	4	6.5	4	100	0	52	50	0	50	0	1.00
454250--454290	19	2.2	19	86	0	55	29	34	4	31	1.79
457178--457232	21	2.6	21	77	5	58	29	0	5	65	1.15
457561--457668	53	2.0	54	82	5	130	27	13	12	46	1.79

Tables:   1   2   3

The End!