Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001975.1 Hibiscus syriacus cultivar Beakdansim tig00004001_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164144

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2211--2254
19
2.4
18
80
3
52
22
0
27
50
1.50
2288--2330
20
2.2
20
87
4
61
44
6
11
37
1.68
2777--2868
31
3.0
31
73
9
91
28
16
18
36
1.92
6728--6771
19
2.4
18
84
3
61
22
0
25
52
1.48
9161--9248
30
2.9
30
77
11
81
28
18
17
36
1.93
10445--10523
38
2.1
38
100
0
158
41
12
15
30
1.84
16386--19800
4
862.5
4
97
2
6519
24
0
25
50
1.50
26462--26521
31
1.9
31
86
0
84
53
13
11
21
1.71
32146--32210
29
2.2
29
94
0
112
13
29
23
33
1.93
35877--35905
2
14.5
2
100
0
58
51
0
0
48
1.00
38726--38917
96
2.0
96
94
2
341
36
7
18
36
1.80
41133--41210
40
2.0
40
81
0
93
48
12
2
35
1.55
43298--46723
687
5.0
687
98
0
6574
36
12
15
35
1.85
49682--49733
19
2.7
19
96
0
95
63
0
0
36
0.95
51123--51153
4
7.8
4
100
0
62
25
0
22
51
1.48
52053--52108
6
9.3
6
88
0
58
44
5
5
44
1.49
52053--52108
4
14.0
4
80
0
58
44
5
5
44
1.49
56337--56382
17
2.8
17
87
9
60
54
0
2
43
1.12
66046--66103
20
2.9
20
94
0
98
37
8
27
25
1.85
66259--66329
34
2.0
36
84
10
94
49
2
1
46
1.25
66654--66690
20
1.9
19
89
10
58
45
10
24
18
1.81
67375--67407
2
16.5
2
100
0
66
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73419--73457
12
3.2
12
85
7
51
64
2
0
33
1.08
75325--75377
24
2.1
27
86
10
76
15
15
16
52
1.74
88138--88178
3
13.7
3
94
0
73
0
34
2
63
1.08
91275--91390
60
1.9
60
82
3
144
37
12
11
39
1.78
92483--92524
22
2.0
21
86
9
59
26
21
21
30
1.98
94318--94374
21
2.7
21
91
0
78
21
29
24
24
1.99
98350--98437
33
2.7
33
85
0
104
62
12
7
17
1.52
98682--98796
21
5.5
21
86
8
155
29
26
21
22
1.99
98696--98823
41
3.1
41
78
15
131
28
23
21
26
1.99
99509--99562
21
2.6
21
90
0
81
27
27
20
24
1.99
99597--99736
21
6.7
21
82
11
162
24
20
24
30
1.99
99600--99716
62
1.9
62
87
3
173
23
21
22
32
1.98
101394--101499
43
2.6
41
77
12
110
51
0
6
40
1.34
106770--106818
21
2.3
21
82
0
62
48
2
6
42
1.39
108279--108326
21
2.3
21
82
7
62
29
25
18
27
1.98
110596--110754
84
1.9
84
98
0
309
22
31
7
38
1.82
111544--111575
12
2.7
12
95
0
55
25
21
15
37
1.93
111833--111923
20
4.9
19
71
15
57
24
16
29
29
1.96
112035--112097
30
2.1
29
82
11
74
50
11
6
31
1.63
112046--112104
30
2.0
29
93
3
100
45
10
6
37
1.65
113632--113658
14
1.9
14
100
0
54
51
25
7
14
1.68
115150--115294
31
4.7
31
98
1
274
38
22
19
19
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115854--116025
64
2.7
64
79
1
175
27
19
19
33
1.96
115922--116076
64
2.4
64
79
4
161
27
20
18
34
1.96
117782--117844
30
2.1
29
85
11
83
49
12
6
31
1.66
117793--117851
30
2.0
29
93
3
100
45
11
6
35
1.67
118902--118964
9
7.0
9
83
7
58
46
20
4
28
1.71
120136--120214
30
2.6
30
73
11
72
31
17
8
41
1.80
120548--120586
2
19.5
2
100
0
78
51
0
0
48
1.00
125300--125388
29
3.0
29
78
8
81
32
13
7
46
1.72
129807--129865
30
2.0
30
93
0
100
15
32
18
33
1.92
131765--132151
186
2.1
182
90
4
609
45
7
3
42
1.49
132756--132818
28
2.2
28
97
0
117
33
23
7
34
1.84
134544--134581
7
5.4
7
100
0
76
86
0
0
13
0.56
144071--144139
2
34.5
2
100
0
138
50
0
0
49
1.00
146610--146639
6
5.0
6
91
0
51
3
33
0
63
1.11
147471--147506
18
2.0
18
88
0
54
5
16
16
61
1.53
155677--155713
14
2.5
15
83
16
51
32
0
5
62
1.18

Tables:   1

The End!