genome.fa.s1976.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001976.1 Hibiscus syriacus cultivar Beakdansim tig00004004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  915387

Tables:   1   2   3   4   

This is table  4  of  4  ( 402 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777500--777539	18	2.2	18	86	0	53	52	0	22	25	1.47
782241--782309	20	3.4	21	80	11	63	28	23	13	34	1.92
784091--784206	60	1.9	60	85	3	162	33	12	15	38	1.84
798313--798347	18	1.9	18	88	11	54	48	0	2	48	1.16
799224--799279	29	2.0	28	85	3	76	37	7	12	42	1.70
810149--810248	22	4.5	22	88	0	146	28	20	23	29	1.98
814119--814151	2	16.5	2	100	0	66	48	0	0	51	1.00
830372--830396	13	1.9	13	100	0	50	28	0	8	64	1.22
830769--830803	17	2.0	18	94	5	63	28	5	2	62	1.32
830796--831173	187	2.0	189	92	7	635	34	7	14	43	1.74
837337--837363	13	2.1	13	100	0	54	55	7	14	22	1.64
840348--840410	32	2.0	32	93	6	110	38	19	25	17	1.93
842493--842522	2	15.0	2	100	0	60	50	0	0	50	1.00
848347--848388	3	14.0	3	100	0	84	33	0	0	66	0.92
850002--850352	43	8.2	43	77	7	236	28	17	24	29	1.97
850215--850352	42	3.2	44	75	11	112	29	19	23	26	1.98
850675--850731	21	2.7	21	97	0	105	0	35	22	42	1.54
850675--850757	42	2.0	42	82	0	103	1	36	20	42	1.60
850739--850794	21	2.7	21	88	0	94	0	42	19	37	1.52
853567--853701	60	2.3	59	85	3	189	25	20	13	40	1.89
854832--854952	42	2.9	42	74	9	104	32	19	19	29	1.96
855294--855481	57	3.3	57	99	0	367	51	13	5	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
856479--856625	41	3.6	39	80	12	138	26	21	17	34	1.96
858187--858321	34	4.0	34	92	3	229	48	17	9	24	1.76
861686--861713	3	9.3	3	100	0	56	32	0	0	67	0.91
865690--866178	55	9.1	54	78	11	228	30	23	14	30	1.95
865754--866194	51	8.3	51	81	9	406	30	24	14	29	1.95
865754--866179	161	2.7	159	84	6	515	30	24	14	30	1.95
867513--867645	19	7.5	19	70	20	76	7	19	0	72	1.13
867513--867637	43	2.9	43	71	16	105	8	19	0	72	1.15
877262--877358	44	2.1	47	88	7	146	40	20	11	27	1.87
881395--881611	36	6.1	36	88	4	323	17	24	19	37	1.94
881395--881611	72	3.0	71	95	0	380	17	24	19	37	1.94
885420--885498	19	3.8	19	75	18	77	32	6	29	31	1.82
885415--885496	44	1.9	41	87	7	119	31	6	29	32	1.82
885470--885506	19	1.9	19	94	0	65	40	5	27	27	1.78
893146--893177	2	16.0	2	100	0	64	50	0	0	50	1.00
896098--896144	18	2.6	17	83	9	58	51	8	4	36	1.52
896344--896383	21	1.9	21	100	0	80	30	10	17	42	1.82
897049--897094	21	2.2	21	88	0	65	34	8	28	28	1.87
898294--898338	16	2.9	16	93	3	74	20	6	31	42	1.77
909455--909484	14	2.1	14	93	0	51	30	6	6	56	1.51

Tables:   1   2   3   4

The End!