genome.fa.s1983.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001983.1 Hibiscus syriacus cultivar Beakdansim tig00004041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  530088

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324155--324336	97	1.9	95	91	2	301	45	14	23	17	1.85
324284--324370	33	2.6	33	92	1	138	41	18	22	17	1.90
324187--324466	129	2.2	130	88	3	413	44	16	22	16	1.86
324327--324604	97	2.9	97	89	1	416	46	15	20	16	1.83
327676--327725	21	2.4	21	96	0	91	4	30	20	46	1.69
342743--342790	25	1.9	25	100	0	96	20	22	12	43	1.86
343835--343914	42	1.9	42	94	0	142	35	21	22	21	1.96
343835--343938	42	2.5	42	87	3	140	38	20	23	18	1.93
352263--352377	60	1.9	60	80	3	133	31	23	5	40	1.77
353790--353828	15	2.6	16	88	11	57	30	2	0	66	1.05
354681--354747	23	2.9	22	80	8	80	41	20	11	25	1.87
357583--357638	27	2.1	27	83	6	69	57	7	0	35	1.26
358247--358284	2	19.0	2	100	0	76	50	0	0	50	1.00
360505--360538	17	2.0	17	88	0	50	26	0	8	64	1.22
363249--363290	22	1.9	23	85	9	61	19	4	0	76	0.96
365428--365467	15	2.8	15	82	17	50	47	0	0	52	1.00
366520--366608	21	4.3	21	78	13	94	32	23	20	23	1.98
366598--366679	41	2.0	41	92	0	137	26	23	18	31	1.97
366611--366675	20	3.2	20	76	20	80	24	21	18	35	1.96
366617--366717	21	4.8	23	72	20	87	25	21	22	29	1.99
366599--366696	41	2.4	41	84	3	126	27	23	19	29	1.98
367406--367430	12	2.1	12	100	0	50	8	16	24	52	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367477--367558	41	2.0	41	88	4	121	24	20	18	36	1.95
367484--367578	21	4.6	21	77	16	90	22	21	23	33	1.97
368773--368804	16	2.0	16	100	0	64	37	18	6	37	1.76
369988--370038	26	2.0	26	100	0	102	41	7	11	39	1.71
370929--371140	107	2.0	107	99	0	415	35	18	11	33	1.88
371141--371173	17	2.0	16	94	5	57	36	15	18	30	1.91
371216--371261	20	2.3	20	100	0	92	43	0	6	50	1.28
371262--371296	17	2.1	17	89	5	54	48	2	0	48	1.16
371537--371673	50	2.8	49	77	5	150	30	9	20	39	1.84
373389--373444	21	2.7	21	75	22	64	32	28	10	28	1.90
374794--374886	21	4.6	20	79	4	105	39	18	23	18	1.92
374791--374886	41	2.3	41	96	0	174	40	17	22	18	1.91
374813--374947	41	3.3	41	81	6	123	38	20	20	20	1.94
374875--374969	20	4.7	20	80	2	91	34	24	17	23	1.96
375462--375499	20	1.9	20	88	0	58	13	15	21	50	1.78
376800--376844	18	2.5	18	85	0	63	26	42	15	15	1.87
377314--377380	20	3.4	20	81	2	73	38	23	22	14	1.92
377369--377425	14	3.8	14	78	17	69	49	26	15	8	1.74
377353--377442	32	2.8	32	94	1	153	47	23	17	11	1.79
377459--377581	14	7.9	14	74	21	102	8	17	26	47	1.76
377454--377597	32	4.4	32	94	1	234	9	18	25	47	1.78
377454--377597	65	2.2	65	92	2	236	9	18	25	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377582--377635	20	2.8	19	86	8	74	16	25	24	33	1.96
379603--379679	14	4.7	15	74	22	59	45	19	22	12	1.84
379613--379679	18	3.8	19	81	18	92	46	17	22	13	1.83
380099--380134	14	2.6	14	90	0	54	30	0	22	47	1.52
380682--380717	14	2.6	14	90	0	54	30	0	22	47	1.52
381259--381294	14	2.6	14	90	0	54	30	0	22	47	1.52
381845--381880	14	2.6	14	90	0	54	30	0	22	47	1.52
379635--382251	586	4.5	590	95	3	4779	31	12	19	36	1.89
383342--383366	12	2.1	12	100	0	50	72	0	28	0	0.86
385630--385749	19	6.7	19	71	20	62	44	20	24	10	1.83
385649--385749	19	5.8	19	70	21	96	45	18	23	11	1.83
385651--385745	33	2.9	33	98	0	181	44	18	24	12	1.85
385906--385942	14	2.6	14	91	0	65	45	24	0	29	1.53
387299--387365	21	3.2	21	68	4	55	19	20	35	23	1.95
387299--387421	42	2.9	41	80	7	113	22	17	36	22	1.95
389419--389615	20	10.8	19	76	14	130	43	21	21	13	1.86
389514--389620	19	5.7	19	93	3	164	44	21	20	13	1.85
389419--389621	33	5.6	36	77	15	163	42	21	22	13	1.87
389616--389680	19	3.4	19	84	2	76	10	18	26	44	1.82
390202--390295	20	4.7	20	80	2	89	23	18	24	34	1.96
390223--390357	41	3.3	41	81	4	130	20	21	20	37	1.94
390284--390376	20	4.6	20	78	4	96	18	24	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390284--390379	41	2.3	41	98	0	183	18	23	17	39	1.92
393106--393149	4	11.0	4	90	0	52	27	6	25	40	1.80
399835--399861	2	13.5	2	100	0	54	51	0	0	48	1.00
402108--402138	15	2.1	15	93	0	53	35	6	16	41	1.74
404055--404098	22	2.0	22	86	8	63	31	0	6	61	1.22
405562--405606	2	23.5	2	82	17	60	48	0	2	48	1.13
405881--406094	39	5.6	37	79	9	202	41	2	7	47	1.47
406114--406161	24	2.0	24	84	4	62	41	0	6	52	1.27
406171--406208	18	2.1	18	95	0	67	31	0	2	65	1.06
407324--407389	28	2.4	27	82	7	78	18	7	1	72	1.15
407310--407399	14	6.6	14	71	14	55	18	6	1	73	1.11
407453--407506	24	2.2	24	83	9	65	9	11	7	72	1.29
419721--419786	31	2.1	31	83	5	80	30	19	18	31	1.96
419774--419927	30	5.1	30	94	1	247	21	23	25	29	1.99
423955--424020	31	2.1	31	83	5	80	30	19	18	31	1.96
424008--424161	30	5.1	30	92	1	238	22	23	24	29	1.99
428164--428229	31	2.1	31	83	5	80	30	19	18	31	1.96
428217--428369	30	5.1	30	92	3	238	21	22	25	30	1.99
428633--428728	2	49.0	2	93	4	169	48	0	1	50	1.07
429639--429686	25	1.9	25	87	8	71	22	35	33	8	1.84
429662--429701	21	1.9	21	89	0	62	25	40	25	10	1.86
430600--430906	155	2.0	151	97	2	578	28	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440350--440389	16	2.6	16	92	4	64	52	5	5	37	1.45
449458--449576	24	5.0	24	83	4	150	26	15	19	39	1.91
452246--452309	32	2.0	32	96	0	119	29	45	6	18	1.74
452248--452305	16	3.6	17	72	11	59	27	50	3	18	1.63
465606--465630	2	12.5	2	100	0	50	48	0	0	52	1.00
471236--471349	39	2.9	39	86	3	140	42	7	3	46	1.48
471263--471357	38	2.5	39	89	1	138	43	8	4	44	1.54
472285--472344	28	2.1	28	84	6	75	50	15	18	16	1.79
475803--475846	20	2.2	20	80	4	54	13	18	6	61	1.54
486495--486542	19	2.6	19	90	3	71	64	4	8	22	1.38
487967--488014	21	2.3	21	78	7	53	10	12	4	72	1.24
494634--494680	18	2.6	19	83	10	62	63	4	8	23	1.40
496735--496791	26	2.2	26	90	0	87	12	14	0	73	1.09
497772--497816	22	2.0	22	95	0	81	37	13	20	28	1.90
500635--500668	13	2.6	13	95	0	59	76	0	14	8	1.01
502263--502307	20	2.3	20	84	3	56	48	2	0	48	1.13
503326--503493	40	4.1	41	78	8	157	31	17	20	29	1.96
503326--503494	80	2.1	82	81	9	204	31	17	20	29	1.96
503535--503627	41	2.2	41	82	1	105	30	21	20	27	1.98
509494--509541	21	2.3	21	96	0	87	66	6	16	10	1.41

Tables:   1   2

The End!