genome.fa.s1993.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001993.1 Hibiscus syriacus cultivar Beakdansim tig00004075_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  637348

Tables:   1   2   

This is table  2  of  2  ( 234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424817--424849	17	1.9	17	93	0	57	45	6	9	39	1.61
429320--429348	14	2.0	15	93	6	51	62	27	0	10	1.28
445304--445356	21	2.5	21	90	0	79	16	18	41	22	1.90
448044--448069	11	2.4	11	100	0	52	34	30	7	26	1.85
449190--449215	12	2.2	12	100	0	52	30	19	0	50	1.48
456369--456533	51	3.2	51	90	3	242	36	8	7	47	1.62
461360--461783	133	3.2	134	83	1	530	31	18	18	31	1.95
462670--462722	25	2.1	25	100	0	106	43	11	3	41	1.58
462798--462833	13	2.8	14	84	16	51	38	11	8	41	1.71
466155--466189	18	1.9	18	88	0	52	28	17	0	54	1.43
469300--469340	18	2.2	19	86	8	57	68	12	0	19	1.21
469765--469953	44	4.3	44	95	0	315	28	18	22	30	1.97
469806--469919	21	5.2	21	68	15	88	28	19	21	31	1.97
469778--469942	23	7.5	22	67	15	99	27	20	22	29	1.98
477408--477580	90	1.9	90	90	3	276	41	17	16	25	1.89
477891--477978	34	2.6	34	85	5	106	29	23	11	35	1.90
481826--482024	94	2.1	95	83	4	251	37	13	23	26	1.91
481851--482044	94	2.1	95	81	4	223	37	14	23	24	1.92
482366--482758	161	2.4	162	90	0	617	34	13	15	36	1.87
482364--482758	54	7.3	54	89	0	594	34	13	15	36	1.88
485456--485507	24	2.1	26	85	7	72	17	15	11	55	1.68
487426--487476	13	3.6	14	89	7	77	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487430--487485	20	2.8	21	78	8	53	82	0	16	1	0.76
487438--487479	11	3.7	11	81	12	50	83	0	16	0	0.65
487427--487493	21	3.2	21	81	6	66	79	1	17	1	0.89
489035--489268	75	3.2	73	83	6	258	29	18	12	38	1.88
492710--492743	17	2.0	17	100	0	68	29	5	11	52	1.61
495782--496027	73	3.4	73	82	1	260	30	19	13	36	1.91
495782--496069	146	2.0	146	79	1	317	30	19	14	35	1.91
496362--496618	136	1.9	135	86	0	361	35	16	19	28	1.93
496584--496729	59	2.5	59	82	2	177	25	25	17	31	1.97
500045--500107	28	2.2	28	85	0	81	34	14	19	31	1.91
508642--508674	13	2.5	13	100	0	66	45	39	0	15	1.46
511753--511783	16	1.9	16	100	0	62	41	12	0	45	1.42
512151--512223	30	2.4	31	77	9	78	35	19	8	36	1.81
513234--513286	15	3.5	15	71	7	54	35	11	9	43	1.73
514961--514995	15	2.3	15	95	0	61	31	8	11	48	1.69
520116--520160	19	2.4	19	96	0	81	42	15	2	40	1.59
521746--521851	53	1.9	54	84	7	142	32	17	5	44	1.73
538670--538698	15	1.9	15	100	0	58	65	27	0	6	1.18
538983--539015	17	1.9	17	93	0	57	45	6	9	39	1.61
543848--543872	8	3.1	8	100	0	50	52	0	12	36	1.39
555464--555547	32	2.7	31	75	10	82	26	33	25	15	1.95
556437--556521	28	3.0	29	91	3	145	43	20	4	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556490--556636	58	2.6	58	89	3	172	44	14	8	32	1.74
556506--556636	58	2.3	57	94	1	226	45	12	8	34	1.72
560014--560112	43	2.2	44	92	3	164	37	22	13	27	1.91
560755--560810	28	2.0	29	96	3	105	42	16	5	35	1.70
562053--562115	21	3.2	20	71	13	58	52	0	1	46	1.10
562128--562274	22	6.7	23	80	11	166	35	9	0	55	1.33
562115--562228	7	15.5	8	71	24	92	36	8	0	54	1.32
562115--562272	66	2.4	66	89	6	232	36	9	0	54	1.33
562116--562274	14	10.9	15	70	16	75	35	9	0	54	1.33
562323--562388	33	2.1	31	94	5	114	39	13	0	46	1.43
562333--562403	16	4.5	16	72	10	74	35	12	0	52	1.40
562366--562405	7	5.4	7	85	8	53	30	12	0	57	1.36
563757--563798	7	5.6	8	81	13	54	50	14	0	35	1.43
563766--563821	17	3.2	18	75	14	55	48	16	1	33	1.56
564043--564094	7	7.4	7	88	0	59	23	0	30	46	1.53
564136--564175	2	19.0	2	85	10	53	45	2	2	50	1.28
564535--564586	21	2.5	21	83	0	68	21	0	26	51	1.47
564535--564612	7	11.1	7	74	0	57	20	0	32	47	1.51
564877--564927	2	26.0	2	92	4	86	49	1	0	49	1.12
565143--565167	12	2.1	12	100	0	50	24	32	0	44	1.54
565398--565430	15	2.2	15	94	0	57	45	0	6	48	1.27
565394--565472	2	39.5	2	73	14	65	46	2	2	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565363--565455	32	3.0	31	79	16	95	45	3	3	48	1.34
570966--571005	21	1.9	21	85	10	55	35	10	2	52	1.48
572973--573132	65	2.5	64	84	5	198	26	16	24	32	1.96
572977--573182	65	3.2	63	78	12	190	26	17	24	32	1.97
574885--574928	14	3.0	14	86	6	52	11	9	0	79	0.93
574902--574928	7	3.9	7	100	0	54	0	11	0	88	0.50
575303--575334	15	2.2	15	94	5	57	65	0	3	31	1.08
575290--575337	15	3.6	13	78	13	53	60	2	2	35	1.20
577436--577867	134	3.2	133	82	2	483	33	18	17	30	1.94
578410--578653	45	5.4	45	81	1	265	42	20	17	20	1.89
578687--578720	10	3.4	10	83	0	50	85	0	2	11	0.71
581268--581348	15	5.8	15	74	14	57	40	0	0	59	0.98
581273--581343	18	3.8	19	78	14	76	40	0	0	59	0.98
581268--581348	36	2.2	36	84	4	110	40	0	0	59	0.98
581301--581335	14	2.6	13	90	4	52	34	0	0	65	0.93
597068--597118	25	2.1	25	81	3	59	11	35	0	52	1.38
598873--598950	31	2.5	31	87	0	102	39	10	15	34	1.81
600235--600276	22	1.9	22	95	0	75	30	21	19	28	1.97
601326--601376	27	2.0	24	85	11	66	58	25	5	9	1.52
603181--603302	64	1.9	65	89	1	192	30	18	21	30	1.97
606555--606898	54	6.4	53	83	3	402	27	16	21	34	1.95
606546--606874	162	2.0	161	87	0	469	27	17	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608317--608390	15	4.9	15	75	21	75	77	2	0	20	0.90
608327--608395	25	2.9	23	83	12	86	75	2	0	21	0.93
609078--609213	37	3.8	36	82	8	161	30	13	13	41	1.84
609112--609212	34	2.9	35	89	8	152	28	13	13	43	1.83
609528--609983	105	4.3	106	89	2	648	21	18	26	33	1.96
610514--610967	65	6.7	65	73	11	284	38	11	19	30	1.87
610646--610908	36	7.4	36	78	9	254	39	13	19	27	1.89
610595--610967	138	2.7	138	83	0	469	38	12	19	29	1.88
610682--610866	102	1.8	102	85	2	264	40	14	17	28	1.88
611330--611365	18	2.0	18	88	0	54	41	30	8	19	1.81
612422--612512	36	2.6	33	78	14	87	1	15	7	75	1.07
612433--612491	20	3.2	19	79	13	61	1	13	8	76	1.09
612452--612515	16	3.9	15	78	15	65	0	15	6	78	0.95
613660--613698	8	5.0	8	84	6	53	58	12	17	10	1.61
613660--613698	15	2.5	15	87	4	51	58	12	17	10	1.61
616196--616278	8	9.5	8	76	14	76	79	3	1	15	0.93
616191--616279	5	18.8	5	73	16	66	79	3	1	15	0.92
616188--616278	25	3.5	25	77	12	94	80	3	1	15	0.90
616224--616276	17	3.2	17	89	5	74	84	0	1	13	0.69
616954--617091	37	3.8	36	84	6	172	29	14	13	42	1.84
616988--617088	34	2.9	35	91	8	161	27	14	13	43	1.84
618183--618229	20	2.4	20	82	3	60	44	19	6	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621213--621242	12	2.4	13	88	11	53	50	0	30	20	1.49
624127--624301	60	2.9	60	87	2	237	38	21	17	22	1.93
627618--627673	24	2.3	24	81	0	67	17	42	25	14	1.87
628386--628521	60	2.3	59	80	3	139	39	17	16	25	1.91

Tables:   1   2

The End!