genome.fa.s1999.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001999.1 Hibiscus syriacus cultivar Beakdansim tig00004090_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232417

Tables:   1   2   

This is table  2  of  2  ( 189 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140924--140998	24	3.2	23	84	5	105	36	21	17	25	1.95
140928--141013	23	3.7	23	84	3	109	38	19	17	24	1.93
142157--142192	18	2.0	18	88	0	54	30	16	0	52	1.44
143501--143607	29	3.7	29	86	3	135	46	24	8	20	1.78
143553--143649	29	3.3	29	86	0	113	39	20	7	32	1.80
145537--145611	35	2.1	35	92	0	123	33	29	28	9	1.88
145689--145763	24	3.2	23	84	5	105	36	21	17	25	1.95
145693--145778	23	3.7	23	84	3	109	38	19	17	24	1.93
146919--146959	18	2.3	18	86	0	55	29	17	2	51	1.58
148267--148373	29	3.7	29	86	3	135	46	24	8	20	1.78
148319--148415	29	3.3	29	86	0	113	39	20	7	32	1.80
151730--151774	21	2.1	21	87	0	63	31	28	24	15	1.96
152355--152389	18	1.9	18	88	11	54	54	5	17	22	1.64
152446--152489	22	2.0	21	87	12	63	43	0	20	36	1.52
153285--153599	149	2.1	149	98	1	614	26	18	21	33	1.97
153567--153611	23	2.0	23	90	0	72	22	26	26	24	2.00
156857--156901	21	2.1	21	87	0	63	31	28	24	15	1.96
157482--157516	18	1.9	18	88	11	54	54	5	17	22	1.64
158399--158713	149	2.1	149	97	1	605	26	18	21	33	1.96
158681--158725	23	2.0	23	90	0	72	22	26	26	24	2.00
161318--161360	21	2.0	21	90	0	68	25	25	18	30	1.98
162035--162190	32	5.0	30	79	6	123	32	17	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162085--162189	32	3.3	32	89	4	142	32	17	19	31	1.94
167471--167495	2	12.5	2	100	0	50	52	0	0	48	1.00
167867--167932	33	2.0	33	96	0	123	28	12	19	39	1.88
167995--168056	3	20.7	3	90	9	92	66	0	0	33	0.92
169411--169732	21	15.6	21	72	10	154	32	21	21	24	1.98
169425--169813	41	9.4	41	87	5	545	32	20	21	25	1.97
169779--169829	21	2.4	21	73	0	57	35	25	17	21	1.95
169452--169829	124	3.1	123	89	3	580	33	20	20	25	1.97
177081--177124	21	2.1	21	82	0	52	29	6	4	59	1.44
180254--180293	22	1.9	19	85	14	53	52	2	5	40	1.37
186680--186756	33	2.3	33	95	0	136	24	15	41	18	1.89
188505--188549	13	3.5	13	75	6	56	48	24	13	13	1.78
188504--188553	25	2.0	25	100	0	100	52	24	12	12	1.72
190196--190233	2	19.0	2	100	0	76	50	0	0	50	1.00
191681--191843	42	3.9	42	93	0	263	32	25	23	19	1.97
192687--192825	29	4.8	29	81	0	163	48	16	1	33	1.55
195006--195476	235	2.0	235	98	0	906	30	23	14	31	1.94
199110--199275	42	4.0	42	92	1	262	35	24	21	18	1.95
200102--200254	29	5.4	29	77	6	134	49	17	3	28	1.64
202032--202121	38	2.4	37	78	12	94	15	18	10	55	1.68
202270--202385	42	2.8	42	97	0	214	16	18	19	44	1.86
202574--202632	21	2.9	21	73	14	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202667--202742	28	2.7	29	82	13	95	40	1	1	56	1.16
202654--202700	24	2.0	23	83	4	58	40	0	2	57	1.11
202667--202742	29	2.7	27	80	17	84	40	1	1	56	1.16
202908--202977	20	3.5	20	96	0	131	35	14	10	40	1.79
202976--203026	15	3.4	15	91	0	84	41	13	5	39	1.69
202960--203026	30	2.3	30	89	2	100	37	14	7	40	1.75
203594--203628	2	17.5	2	100	0	70	51	0	0	48	1.00
208184--208245	23	2.7	23	89	0	97	33	8	22	35	1.84
208273--208762	198	2.5	198	82	4	569	31	15	14	38	1.87
212361--212412	21	2.5	21	100	0	104	32	17	13	36	1.89
211984--212879	200	4.4	199	77	13	846	30	13	16	39	1.87
212161--212817	222	3.0	218	80	9	705	30	14	15	39	1.87
212382--212879	204	2.5	201	80	7	576	31	15	16	37	1.90
215737--215772	15	2.4	15	90	0	54	38	2	41	16	1.63
216255--216888	198	3.2	198	92	1	1042	32	16	15	35	1.90
218409--218476	23	3.0	23	84	0	82	20	25	26	27	1.99
220894--220954	23	2.7	23	89	0	86	21	27	24	26	1.99
222195--222240	19	2.4	19	88	0	65	60	6	2	30	1.34
223662--223700	18	2.2	18	95	0	69	7	35	0	56	1.28
224338--224393	24	2.4	24	77	14	64	51	8	0	39	1.33
226262--226308	20	2.3	20	78	7	60	14	21	14	48	1.80
226370--226787	182	2.3	183	87	5	589	27	15	12	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227651--227695	23	2.0	22	86	4	63	33	0	0	66	0.92
229627--229699	31	2.4	31	77	6	78	36	1	10	50	1.46
231693--231747	17	3.2	17	78	2	56	43	0	7	49	1.30

Tables:   1   2

The End!