Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002011.1 Hibiscus syriacus cultivar Beakdansim tig00004110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66087

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
954--1029
31
2.5
31
88
0
98
14
27
28
28
1.95
970--1056
31
2.8
31
84
3
104
14
25
31
28
1.95
1184--1211
14
2.0
14
100
0
56
50
0
21
28
1.49
11059--11089
15
2.1
15
100
0
62
19
41
19
19
1.90
11269--11318
21
2.4
21
83
9
59
30
0
14
56
1.39
21261--21286
2
13.0
2
100
0
52
50
0
0
50
1.00
26398--26439
19
2.2
19
100
0
84
50
9
11
28
1.70
26690--26744
24
2.3
24
90
0
83
47
7
14
30
1.71
26832--27155
83
4.0
83
88
2
471
42
11
5
40
1.64
26980--27114
41
3.3
42
65
18
93
40
14
5
39
1.71
37104--37171
29
2.2
30
84
7
84
42
20
11
25
1.86
38938--38963
4
6.5
4
100
0
52
23
0
0
76
0.78
40792--40817
3
8.7
3
100
0
52
65
0
0
34
0.93
42637--42727
19
4.4
20
74
17
87
37
5
25
31
1.79
43010--43036
6
4.5
6
100
0
54
0
14
51
33
1.43
43116--43180
20
3.2
20
70
12
60
23
18
24
33
1.96
43210--43246
19
1.9
19
88
0
56
21
13
29
35
1.92
49241--49293
19
3.1
18
78
13
58
43
1
0
54
1.11
49237--49283
19
2.4
19
92
3
76
42
2
0
55
1.12
49416--49488
30
2.4
30
100
0
146
30
20
23
26
1.99
52737--52820
30
2.8
30
96
0
159
41
11
4
41
1.63
53949--53987
17
2.3
17
95
0
69
33
7
15
43
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54266--54414
65
2.3
65
82
3
176
30
22
19
27
1.98
55085--55133
19
2.6
19
84
9
57
24
28
20
26
1.99
57882--57920
16
2.5
15
84
8
51
56
28
0
15
1.40
59862--59901
21
1.9
21
89
0
62
10
25
40
25
1.86
63740--63779
21
1.9
21
85
10
55
35
10
2
52
1.48

Tables:   1

The End!