genome.fa.s2012.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002012.1 Hibiscus syriacus cultivar Beakdansim tig00004111_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  773058

Tables:   1   2   3   

This is table  3  of  3  ( 324 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623111--623137	3	9.0	3	100	0	54	66	0	0	33	0.92
624602--624647	4	12.2	4	82	13	62	54	21	0	23	1.45
624610--624645	18	2.1	17	94	5	63	55	22	0	22	1.44
625204--625586	30	12.1	30	68	21	180	34	10	10	43	1.75
625271--625661	130	3.0	131	97	1	734	33	11	10	43	1.75
625293--625681	63	6.0	64	81	5	453	34	11	10	43	1.76
625224--625665	130	3.4	130	91	5	715	34	11	10	43	1.75
626318--626367	3	16.7	3	91	0	82	32	2	2	64	1.16
635176--635306	43	3.0	44	92	5	223	36	8	6	48	1.60
640227--640283	28	2.0	28	100	0	114	31	38	7	22	1.81
642487--642561	39	1.9	39	94	0	132	30	16	13	40	1.86
648883--648924	2	22.0	2	85	9	61	50	2	0	47	1.14
649898--649955	29	2.2	24	82	17	64	29	13	10	46	1.77
654521--654579	29	2.0	29	100	0	118	23	13	13	49	1.78
666325--666524	87	2.3	87	85	4	260	44	8	11	36	1.70
666900--666944	23	2.0	23	90	0	72	37	17	8	35	1.81
666869--667028	87	1.8	87	91	2	268	33	13	10	43	1.78
666978--667054	23	3.3	23	92	0	118	35	18	6	40	1.76
667721--667746	11	2.4	11	100	0	52	23	11	23	42	1.86
671057--671095	17	2.2	18	86	4	53	41	2	2	53	1.28
671819--671900	44	1.9	41	87	7	119	31	6	29	32	1.82
671821--671911	19	4.4	20	76	17	105	35	5	28	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672276--672358	40	2.1	40	88	0	121	36	21	20	21	1.96
672300--672513	21	10.6	21	73	6	174	34	23	20	21	1.97
672299--672419	61	2.0	61	96	0	224	33	24	19	22	1.97
672351--672575	40	5.7	40	81	7	280	36	21	20	22	1.96
672351--672575	80	2.9	77	88	7	312	36	21	20	22	1.96
672299--672460	61	2.7	61	87	5	204	33	23	20	22	1.97
672734--672781	24	2.0	24	83	0	60	45	12	12	29	1.78
674006--674099	21	4.5	21	73	20	72	24	0	29	45	1.53
673981--674053	35	2.1	35	87	10	105	30	0	26	43	1.55
675774--675887	26	4.3	26	93	1	183	0	19	26	54	1.44
676258--676294	17	2.2	17	95	0	65	24	16	29	29	1.96
676279--676342	11	5.6	11	88	3	65	31	23	21	23	1.99
676299--676343	12	3.8	12	88	11	67	35	26	17	20	1.95
681154--681678	252	2.1	252	92	0	861	41	11	31	16	1.83
681088--681689	84	7.2	84	76	7	487	42	10	30	16	1.82
690491--690515	12	2.1	12	100	0	50	24	0	0	76	0.80
695817--695849	15	2.1	16	94	5	59	36	6	12	45	1.66
695817--695857	15	2.8	15	88	3	57	34	7	14	43	1.73
697886--698102	60	3.6	60	89	1	310	28	16	19	35	1.94
697989--698087	31	3.3	31	65	11	78	21	19	23	36	1.95
698229--698361	60	2.2	60	87	2	187	33	16	18	32	1.93
699771--699830	25	2.4	25	80	0	66	50	18	10	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703918--703981	27	2.4	27	78	0	74	42	3	45	9	1.52
707235--707266	3	10.7	3	100	0	64	65	0	0	34	0.93
710910--711530	312	2.0	309	99	0	1215	30	15	11	42	1.82
714797--714832	15	2.5	14	82	8	54	44	2	5	47	1.41
717028--717147	42	2.9	42	98	0	231	15	20	19	44	1.87
717321--717392	30	2.4	30	84	11	85	47	0	0	52	1.00
717351--717433	14	6.2	13	71	20	55	44	0	0	55	0.99
717338--717462	23	5.4	25	73	19	112	46	0	0	52	1.06
717356--717462	23	4.6	24	80	14	127	46	0	0	52	1.06
717628--717697	20	3.5	20	92	0	122	37	14	8	40	1.76
717680--717761	15	5.5	15	86	2	112	36	18	7	37	1.79
717680--717761	30	2.8	30	92	1	130	36	18	7	37	1.79
717680--717766	45	2.0	44	90	2	138	34	18	6	40	1.77
718579--718614	10	3.4	10	85	14	54	58	8	2	30	1.42
723271--723297	13	2.1	13	100	0	54	22	25	14	37	1.93
725647--725690	23	1.9	23	95	0	79	15	29	27	27	1.96
725799--725851	18	2.9	18	94	5	90	18	22	33	24	1.97
734857--734925	36	1.9	36	96	0	129	17	2	27	52	1.59
737331--737393	21	3.0	21	71	8	58	52	1	3	42	1.27
737331--737400	20	3.4	20	71	11	61	51	1	4	42	1.30
752801--752862	7	8.1	8	77	12	60	72	0	0	27	0.85
752797--752862	22	2.9	22	86	8	87	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752783--752853	32	2.2	33	87	5	101	66	0	1	32	1.01
752827--752872	21	2.1	22	84	4	58	73	2	0	23	0.94
753224--753265	22	2.0	22	90	4	68	33	0	2	64	1.07
753256--753298	21	2.0	21	82	8	52	20	0	4	74	1.00
756918--758369	266	5.5	264	83	5	1647	32	15	14	37	1.87
758063--758124	26	2.2	26	83	11	70	41	12	1	43	1.53
759380--760921	529	3.0	518	81	8	1796	31	17	14	36	1.90
759687--760921	265	4.7	263	82	7	1388	31	16	15	36	1.89
760758--761082	162	2.0	161	88	4	485	29	14	16	39	1.88
760972--762401	263	5.4	266	84	2	1715	32	16	15	36	1.89
760966--762401	529	2.7	525	83	5	1764	32	16	14	36	1.89
761490--763359	954	2.0	957	83	5	2377	31	15	15	36	1.89
762552--762614	26	2.3	26	86	10	81	42	11	0	46	1.39
763349--763414	26	2.5	26	100	0	132	40	6	0	53	1.26
763647--763695	26	1.9	25	88	12	73	36	10	2	51	1.48
763950--764045	43	2.2	43	94	0	165	35	17	13	33	1.89
764570--764623	19	2.6	21	80	19	60	37	5	0	57	1.22
765904--765935	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3

The End!